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Nawrocki, Eric P and Eddy, Sean R Query-Dependent Banding (QDB) for Faster RNA Similarity Searches, PLoS Comput Biol, 2007
Krogh, Anders and Mitchison, Graeme Maximum entropy weighting of aligned sequences of proteins or DNA., Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, 1995
Gerstein, Mark and Sonnhammer, Erik L.L. and Chothia, Cyrus Volume changes in protein evolution, Journal of Molecular Biology, 1994
Durbin, Richard and Eddy, Sean R. and Krogh, Anders and Mitchison, Graeme Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press, 2002
Johnson and Steven Remote Protein Homology Detection using Hidden Markov Models, Graduate School of Arts and Sciences of Washington University, 2006