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Attention:
Due to technical maintenance some tools might be unavailable. See maintenance information. 
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AGenDA - Alignment-based Gene Detection Algorithm - Version 1.0
AGenDA is a gene-prediction tool that is based on cross-species sequence comparison. The software tools CHAOS and DIALIGN are used to align a pair of syntenic genomic sequences, e.g. from human and mouse. AGenDA searches for conserved splice sites and start/stop codons at the boundaries of identified sequence homologies in order to identify potential exons; these potential exons are then used to assemble entire gene models.
Users of AGenDA at BiBiServ are requested to cite:
O. Rinner and B. Morgenstern (2002)
AGenDA: Gene prediction by comparative sequence analysis.
In Silico Biology 2, 195-205.
L. Taher, O. Rinner, S. Gargh, A. Sczyrba, M. Brudno, S. Batzoglou, B. Morgenstern (2003)
AGenDA: Homology-based gene prediction
Bioinformatics 19(12), 1575-1577.
O. Rinner and B. Morgenstern (2002)
AGenDA: Gene prediction by comparative sequence analysis.
In Silico Biology 2, 195-205.
L. Taher, O. Rinner, S. Gargh, A. Sczyrba, M. Brudno, S. Batzoglou, B. Morgenstern (2003)
AGenDA: Homology-based gene prediction
Bioinformatics 19(12), 1575-1577.
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