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ConCysFind Fat Jar containing binaries, sources and all dependencies.
Database Database from UniProt in FASTA format

The BiBiServ team does not provide any support for compiling or using a tool from the download section. Please contact the author directly in case of any problem.

ConCysFind is a commandline tool written in Java and need at least Java (8 or newer) and blastp (2.7 or newer) to run. A typically commandline call looks like : java -jar ConCysFind.jar <option1> <option2>... There is no predetermined order for input and parameter options.

The database contains protein sequences from 21 plant species, covering a wide evolutionary distance of the plant kingdom. A executable blastp file has to be present in the ConCysFind folder (environment) a database has to be built to use ConCysFind: makeblastdb -in <FASTA FILE> -dbtype prot To build a custom database, summarize the UniProt protein IDs in a FASTA file.