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DCA: Divide-and-Conquer Multiple Sequence Alignment - V.1.0 - Submission
Paste your sequences (in FASTA format) here:
Please submit a sequence!
or upload:
Substitution matrix
:
predefined
PAM 250
PAM 160
Blosum 62
Blosum 45
Blosum 30
DNA/RNA
unit cost
Free shift
Yes
No
Algorithm-specific parameters:
Approximate Cut Positions
On
Off
(On: FastDCA; Off: slower, more accurate algorithm)
Recursion Stop Size
L
=
(1 ... 100 recommended; small: faster algorithm, maybe worse alignment)
Window Size
W
=
(higher value: slightly slower algorithm and better alignment)
Weight Intensity
lambda
=
(0 = no weighting ... 1 = max. weighting)
This tool supports email notification, when your computation is done.
If you would like to be notified, enter your email adress here (optional):
Email:
Note:
The input limits due to our server capacity are as follows: maximum number of sequences: 30, maximum sequence length: 2000 characters.
Wed Dec 19 14:14:06 2012