GUUGle efficiently locates potential helical regions
under RNA base pairing rules, which include Watson-Crick as well as G-U pairs. It takes
two Fasta files as input.
Default Function
In-/Output values
INPUT :: Target SequenceThe 'Target' sequence input accepts a set of RNA
sequences in different formats.
INPUT :: Query SequenceThe 'Query' sequence input accepts a set of RNA sequences
in different formats.
OUTPUT :: OutputThe 'Query' sequence input accepts a set of RNA sequences
in different formats.
Parameter
| Match at least |
The output matches at least with this
length. |
| Target Seeds extended by x bases |
If option 'Target Seeds extended by x bases' is used, the
output mode changes. The matching target sequences are reported, and extended by
given bases in either direction, if possible. The output mode now is similiar to
Fasta format. |
| Output Limit |
Limit the number of outputs to the given
constraint |
| Show Match Length Distribution |
Shows the match length dsitribution |
If you need to create larger output than we permit for
online use, or want to incorporate GUUGle into your own pipeline, please download the GUUGle program.
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