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BiBiServ -
Bielefeld University Bioinformatic Service

JALI - Submission

Gap initiation cost (negative values or zero only)

Gap extension cost (negative values or zero only)

Jump costs (negative values or zero only)

Amino acid similarity matrix (currently only 'vt160' available)

Sequence:

Please enter your sequence here:

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Alignment:

Please enter your Alignment here:

>d3tgl__|3.50.1.7.2
-------------------------------------------------------GIRAATSQ--EINELTYYTTLSANSYCRTVIPG-------------ATWDCIHCD------------------------------------------------------------------ATEDLKIIKTWS-------------------------------TLIYDTNAMVARG-DSEKTIYI-VFRGSSSIRNWIADLT-----------FVPVSY-PPVS-----------------------GTK---VHKGFLDSYGEVQNELVA--------------------------------------------TVLDQFKQYPSYK------VAVTGHSLGGATVLLCALDLYQ--RE-EGLSSS------NLFLYTQGQPRVGDPAFANYVVST---GIPYRRTVNERDIVPHLPPA--AFGFLHAGEEYWITDNSPE--------------TVQVCTSDLETSDCS-----------------------------------NSIVPFTSVL---------DHLSYFGINTGLCT-----------------------
>d1tib__|3.50.1.7.4
----------------------------------------------------------EVSQD--LFNQFNLFAQYSAAAYCGKNNDA-------------PAGTNITCTG-------------------------------------------N----------------ACPEVEKADATFLYSFED------------------------------SGVGDVTGFLALD-NTNKLIVL-SFRGSRSIENWIGNLN-----------FDLKEINDICS-----------------------GCR---GHDGFTSSWRSVADTLRQ--------------------------------------------KVEDAVREHPDYR------VVFTGHSLGGALATVAGADLR-------GNGY-------DIDVFSYGAPRVGNRAFAEFLTVQT--GGTLYRITHTNDIVPRLPPR--EFGYSHSSPEYWIKSGTL----------------VPVTRNDIVKIEG---ID-----------------ATGG----------NNQPNIPDIP---------AHLWYFGLIGTCL------------------------
>d1thg__|3.50.1.7.7
-------------------XAPTAVLNGNEVISG---VLEGKVDTFKGIPFADPPLNDLRFKH--PQPFTGSYQGLKANDFSPACMQLDP-GNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGD-PDKVMIFG-ESAGAMSVAHQLIAYGGDNTYNGK-KLFHSAILQSGGP-LPYHDSSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELFRSGRYAKVPYISGNQEDEG------TAFAPVALNATTTPHVKKWLQYIFYDASEASID------RVLSLYPQTLSVGSPFRTGILNALTPQFKRVAAILSDMLFQSPRRVM--LSATKDVNRWTYLSTHLHNL-----VPFLGTFHGNELIFQFNVNIGPANSYL-----------RYFISFANHHDPNVGT--NLLQWDQYTDE---GKEMLEIHMTDNVMRTDDYRIEGISNFETDVNLYG---------
>d1tahb_|3.50.1.8.1
-------------------------------------------------------------------------DTYAATRYPVILVHG-------------LAGTDKFAN--------------------------------------VVDYWYG----------------IQSDLQSHGAKVYVAN---LS--GFQSDDGP--NGRG-----EQ--LLAYVKQVLAATG---ATKVNLIG-HSQGGLTSRYVAAVAP----------QLVASVTTIGTP---------------------HRGSE----FADFVQDVLKTDPTGLS--S-----------TVI--------------------A---AFVNVFGTLVSSSHNT------DQDALAALRTLTTAQTATYNRN--FPSAGLGAP------GSCQTGAATETVGGSQHLLYSWGGT-AIQPTSTVLGVTGATDTSTG---TLDVANVTDPSTLALLATG----------AVMINRASGQNDGLVSRCSSLFG--------------QVISTS-----------YHWNHLDEIN---------QLLGVRGANAEDPVAVIRTHVNRLKLQGV--------
>d1broa_|3.50.1.5.1
-------------------------------------------------------PFITVGQE--NSTSIDLYYEDHGTGQPVVLIHG-------------FPLSGHSWE-------------------------------------------------------------------RQSAALLDAG-------------------------------YRVITYDRRGFGQS-SQPTTGYD-YDTFAADLNTVLETLD------------LQDAVLVGFS----------------------MGTG---EVARYVSSYGTARIAKVAFLAS---------------------------------------LEPFLLKTDDNPDG------AAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD------ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDV--PALILHGTGDRTLPIENTAR-----------VFHKALPSAEYVEVEGAPH-G-------------------------------LLWTHAEEVN--------TALLAFLAK-----------------------------
>d1yasa_|3.50.1.10.1
--------------------------------------------------------------------------AFAHFVLIHTICHG----------------AWIWHK---------------------------------------------------------------------LKPLLEALG------------------------------HKVTALDLAASGVD-PRQIEEIGSFDEYSEPLLTFLEALP-----------PGEKVILVGES---------------------CGGLN----IAIAADKYCEKIAAAVFHN---------------------------------------------SVLPDTEHCP------SYVVDKLMEVFPDWKDTTYFTY------TKDGK------EITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPF--FTKEGYGSIKKIYVWTDQ----------------DEIFLPEFQLWQIEN----------------------------------YKPDKVYKVE--------GGDHKLQLTKTKEIAEILQEVADTYN------------
>d1ede__|3.50.1.3.1
--------------------------------------------------------MINAIRT--PDQRFSNLDQYPFSPNYLDDLPG------------YPGLRAHYLDEGN------------------------------SDAEDVFLCLHG--------------EPTWSYLYRKMIPVFAESG------------------------------ARVIAPDFFGFGKS-DKPVDEEDYTFEFHRNFLLALIERLD-----------LRNITLVVQD---------------------WGGFLG--LTLPMADPSRFKRLIIMN--------------------------------------------ACLMTDPVTQPAF------SAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRW------APTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAI--SFWQNDWNGQTFMAIGMKD-----------KLLGPDVMYPMKALINGCP-----------------------------------EPLEIADAG---------HFVQEFGEQVAREALKHFAETE---------------
>d1wht.1|3.50.1.2.1
----------------GHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQ--PAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWN-------------------------------------------------------------KVANVLFLDSPAGVGFSYTNTSSDIYTSGDN----------RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK-----N-PVINLKGFMVGNG--------------------LIDDYHDYVGTFEFWWNHGIVSDDTYRR--------------------------------------LKEACLHDSFIHPSPACD------AATDVATAEQGNIDMYSLYTPVCNIXSYDPCTER------YSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTD---------AVVPLTATRYSIGALGLPTTTSWYP--------------WYDDQEVGG-----WSQVYKGLTLVSVRG-----AGHEVPLHRPRQALVLFQYFLQGKPMPGQ---------
>d1tca__|3.50.1.7.1
-------------------------------------LPSGSDPAFSQPKSVLDAGLTCQGASPSSVSKPILLVPGTGTTGPQSFDSN------WIPLSTQLGYTPCWISP--------------------------------------------------------------PPFMLNDTQVNTEY---------------------------------MVNAITALYAGSGNNKLPVLT-WSQGGLVAQWGLTFFPS--------IRSKVDRLMAFAP-----------------------DYKG-TVLAGPLDALAVSAPSVWQQTTG---------------------------------------SALTTALRNAGGLT------QIVPTTNLYSATDEIVQPQVSN-----SPLDSS-----YLFNGKNVQAQAVCGPLFVIDHAGS--LTSQFSYVVGRSALRSTTGQAR-SADYGITDCNPLPANDLTP--------------EQKVAAAALLAPAAAAIVAG------------------------------PKQNCEPDLMP---------YARPFAVGKRTCSGIVTP------------------
>d1din__|3.50.1.4.1
-----------------------------------------------------------------------MLTEGISIQSYDGHTFG------------ALVGSPAKAP---------------------------------------------------------------APVIVIAQEIFGVN--------------------------------AFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ----------REQAYKLWQAFD----------------------MEAG----VGDLEAAIRYARHQPYS--------------------------------------------NGKVGLVGYCLGG------ALAFLVAAKGYVDRAVGYYGVG------------------LEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQV----HWYEEAGHSFARTSSS----------------GYVASAAALANER--------------------------------------------------------TLDFLAPLQS--------------------------
>d1thta_|3.50.1.6.1
----------------------------------QCKTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEY-------------LSTNGFHVFR-------------------------------------------------------------YDSLHHVEFTMTTGK--------------------------------NSLCTVYHWLQTKGTQNIGLIA----ASLSARVAYEVIS----------DLELSFLITAVG---------------------VVNLR-DTLEKALGFDYLSLPIDELP--------------------------------------------N-DLDFEGHKLGS------EVFVRDCFEHHWDTLDSTLDK-----VANTSVP------LIAFTANNDDWVKQEEVYDMLAHIRTGHCKLYSLLGSSHDLGENLVV--LRNFYQSVTKAAIAMDGG----------------SLEIDVDFIEPDFEQ----------------------------------LTIATVNERR----------LKAEIENRTPEMA-----------------------

Or upload:

JALI accepts sequences in Fasta-format only !

Optional Parameter
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