Table of Serpin Protein Codes, Phenotypes,Accession Numbers and Organisms

List of 111 Serpin protein sequences that - except for PTI9 HUMAN - were used in phylogenetic analyses (Atchley et al., 2000). Included are protein codes as used, descriptive phenotypes, accession numbers, and groupings according to known or putative exon-intron structure. There are six vertebrate groups `Vert_1' to `Vert_6', one viral group `Vir', one plant group `Z' consisting of the barley protein Z, two insect groups `Ins_1' and `Ins_2', one nematode group `N', and one horseshoe crab group `C'., with entries from 1-16, 17-64, 65-76, 77-84, 85-88, 89-91, 92-101, 102, 103, 104-106, 107-109, and 110-111, respectively. Entries are ordered as in the list of aligned sequences.

References:

Atchley, W. R., T. Lokot, K. Wollenberg, A. Dress and H. Ragg. Phylogenetic analyses of amino acid variation in the serpin proteins. (2001)
Submitted to Molecular Biology and Evolution.

Ragg, H. , T. Lokot, P. B. Kamp, A. Dress and W. R. Atchley. Vertebrate serpins: construction of a conflict-free phylogeny by combining exon-intron and diagnostic site analyses. (2001)
to appear in the April issue of Molecular Biology and Evolution.