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• About This Document
• Introduction
• A Word of Caution
• Preparing the Input Sequences
• The Program
• Scripts
• Output
• Format of Textual Output
• Examples
  • Multiple Sequence Alignment
  • Pairwise Sequence Alignment
  
  
• DTD for XML Output
  • The Complete DTD
  • Explanation of Element Rules
  • Explanation of Parameter Entity
  • Explanation of Attribute Rules
  
  
• Version History and Release Notes
  • Version 2003-03-18: Release of Mar 18 2003
  • Version 2002-08-26: Release of Aug 26 2002
  • Version 2002-07-25: Release of Jul 25 2002
  
  
• Bibliography
• About this document ...