Oma results 1ezm
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Information
| Number of sequences | 5 |
| Longest sequence | 308 |
| Average identity | 60 |
| | |
| best oma cost | 43746 |
| at segment width | 128 |
| time[s] | 22 |
| mem[pages] | 1298 |
| mem[MB](8kb/page) | 10 |
Alignment
# -----GVLGDQKYINTTYSSYYGYYYLQDNTR--GSGIFTYDGRNRT-VLPGSLWADGDNQFFASYDAAAVDAHYYAGVVYDYYKNVHGRLSYDGSNAAIRSTVHYGRGYNNAFWNGSQMVYGDGDG--QTFLPFSGGIDVVGHELTHAVTDYTAGLVYQNESGAINEAMSDIFGTLVEFYANRNPDWEIGEDIYTPGVAGDALRSMSDPAKYGDPDHYSK----RYTGTQDNGGVHTNSGIINKAAYLLSQGGVHYGVSVTGIGRDKMGKIFYRALVYYLTPTSNFSQLRAACVQAAADLYGSTSQEVNSVKQAFNAVGV #
# --TGKGVLGDTKSLNTTLSG--SSYYLQDNTR--GATIFTYDAKNRS-TLPGTLWADADNVFNAAYDAAAVDAHYYAGKTYDYYKATFNRNSINDAGAPLKSTVHYGSNYNNAFWNGSQMVYGDGDG--VTFTSLSGGIDVIGHELTHAVTENSSNLIYQNESGALNEAISDIFGTLVEFYDNRNPDWEIGEDIYTPGKAGDALRSMSDPTKYGDPDHYSK----RYTGSSDNGGVHTNSGIINKQAYLLANGGTHYGVTVTGIGKDKLGAIYYRANTQYFTQSTTFSQARAGAVQAAADLYGANSAEVAAVKQSFSAVGV #
# TGTGTTLKGKTVSLNISSES--GKYVLRDLSKPTGTQIITYDLQNREYNLPGTLVSSTTNQFTTSSQRAAVDAHYNLGKVYDYFYQKFNRNSYDNKGGKIVSSVHYGSRYNNAAWIGDQMIYGDGDG--SFFSPLSGSMDVTAHEMTHGVTQETANLNYENQPGALNESFSDVFGYFND-----TEDWDIGEDI---TVSQPALRSLSNPTKYGQPDNFKNYKNLPNTDAGDYGGVHTNSGIPNKAAY----------NTITKIGVNKAEQIYYRALTVYLTPSSTFKDAKAALIQSARDLYG--SQDAASVEAAWNAVGL #
# -ATGKGVLGDSKSFTTTASG--SSYQLKDTTR--GNGIVTYTASNRQ-SIPGTLLTDADNVWN---DPAGVDAHAYAAKTYDYYKSKFGRNSIDGRGLQLRSTVHYGSRYNNAFWNGSQMTYGDGDGDGSTFIAFSGDPDVVGHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ-----RKNWLVGDDIYTPNICGDALRSMSNPTLYDQPHHYSN----LYKGSSDNGGVHTNSGIINKAYYLLAQGGTFHGVTVNGIGRDAAVQIYYSAFTNYLTSSSDFSNARAAVIQAAKDLYGANSAEATAAAKSFDAVG- #
# -ATGKGVLGDTKQFETTKQG--STYMLKDTTR--GKGIETYTANNRT-SLPGTLMTDSDNYWT---DGAAVDAHAHAQKTYDYFRNVHNRNSYDGNGAVIRSTVHYSTRYNNAFWNGSQMVYGDGDG--TTFLPLSGGLDVVAHELTHAVTERTAGLVYQNESGALNESMSDIFGAMVD-----NDDWLMGEDIYTPGRSGDALRSLQDPAAYGDPDHYSK----RYTGSQDNGGVHTNSGINNKAAYLLAEGGTHYGVRVNGIGRTDTAKIYYHALTHYLTPYSNFSAMRRAAVLSATDLFGANSRQVQAVNAAYDAVGV #
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 7 | 2 | 192 | 6.383 | 44318 | 44022 | | 43872 | 43872 |
| 6 | 4 | 126 | 3.948 | 44088 | 43872 | | 43872 | 43872 |
| 5 | 8 | 62 | 2.128 | 43968 | 43872 | | 43809 | 43809 |
| 4 | 16 | 30 | 1.286 | 43841 | 43809 | | 43788 | 43746 |
| 3 | 32 | 14 | 0.956 | 43746 | 43746 | | 43746 | 43746 |
| 2 | 64 | 6 | 1.120 | 43746 | 43746 | | 43746 | 43746 |
| 1 | 128 | 2 | 1.952 | 43746 | 43746 | | 43746 | 43746 |
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Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.
