Oma results 1havA

back to summary.

Information

Number of sequences	5
Longest sequence	199
Average identity	15

best oma cost	31928
at segment width	32
time[s]	?
mem[pages]	0
mem[MB](8kb/page)	0

Alignment

    : KNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKF--EKDYEMM---EFYFNRGGTYYSISAGNVVI--QSLDVGFQDVVLMKVP-TIPKFRDITQHFIKKGDVPRALNRLATLV-TTVNGTPMLISEGPLKMEEKATYVHKKND---GTTVDLTVDQAWRGKGE-GLPGMCGGALV-SSNQSIQNAILGIH-VAGGNSILVAKLVT-- :
    : NTIGNV----FVKGQTSATGVL-IGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGE------YEVKEILQEPFGAGVDLALIRLKPDQNGVSLGDKISP----------AKIGTSNDLKDGDKLELIG-YPFDHKVNQMHRSEIELTTLSRGLRYYGF-TVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNY :
    : PYQVSL-----NSGYHFCGGSL-INSQWVVSAAHCYKS--GIQVRLG-EDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLK-SAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDXGGPVV-CSGKLQGIVSWGSGCAQKNKPGVYTKVCN-- :
    : IAGGEA----ITTGGSRC--SL-GFNVSVNGVAHALTA--GHCTNIS-ASWSIGTRTGTSFPNND-------YGI--IRHSNPAAADG-RVYLYNGSYQDITTAGNAFVGQAV------QRSGSTTGLRSGSVTGLNATVNYGS-------SGIVYGMIQTNVC-----AQPGDSGGSLF-AGSTALGLTSGGSGNCRTGGTTFYQPVTE-- :
    : DRLFDV----KNEDGDVIGHAL-AMEGKVMKPLHVKGT--IDHPVLS---KLKFTKSSA-------------YDM--EFAQLPVNMRS-EAFTYTS-----------------------EHPEGFYNWHHGA-------VQYSG-------GRF---TIPRGV------GGRGDAGRPIMDNSGRVVAIVLGGAD--EGTRTALSVVTWN-- :

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
6	2	126	3.920	33560	32808	32306	32306
5	4	62	2.014	32674	32306	32289	32289
4	8	30	1.178	32545	32289	32210	32210
3	16	14	12.595	32266	32210	32077	32021
2	32	6	1118.825	32021	32021	31928	31928

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.