Oma results 2hsdA

back to summary.

Information

Number of sequences	4
Longest sequence	262
Average identity	19

best oma cost	25281
at segment width	128
time[s]	151
mem[pages]	5856
mem[MB](8kb/page)	46

Alignment

# ND-LSGKTVIITG--GARGLGAE-AARQAVAAGARVVL--ADVLDEEGA-----ATARELG-DAARYQHLDVTIEEDWQRVVAYAREEFG---SVDGLVNNAGISTGMFLETESV-----ERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP-MTAETGIRQGEGNYPNTPM--GRVGEPGEI----------AGAVVK-LLSDTSSYVTGAELAVDGG #
# AR----TVVLITG--CSSGIGLHLAVRLASDPSQSFKV--YATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG---RVDVLVCNAGLGLLGPLEALGE-----DAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTV-LGSPEEV-LDRTDIHTFHRFYQYLAHSKQV---FREAAQNPEEVAEVFLTALRAPKPTLRYFTTER #
# AGLLDGKRILVSGIITDSSIAFH-IARVAQEQGAQLVLTGFDRLRLIQR-----ITDR-LP-AKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP--GGSIVGMDFDPS-RAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCA-LLSDWLPATTGDIIYADGG #
# EA----RRVLVYG--GRGALGSR-CVQAFRARNWWVAS--IDVVENEEA-----SASVIVK-MTDSFTEQADQVTAEVGKLLGDQ--------KVDAILCVAGGWAGGNAKSKSLF----KNCDLMWKQSIWTSTISSHLATKHLKE--GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLA------GKNSGMPSGAAAIAV-LPVTLDTPMNRKSMPEADF--SSWTPLEFL----------VETFHD-WITGNKRPNSGSLIQVVTT #

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
7	2	142	4.203	26000	25576	25424	25424
6	4	126	3.566	25824	25424	25424	25424
5	8	62	1.795	25592	25424	25404	25404
4	16	30	0.968	25476	25404	25380	25344
3	32	14	1.350	25440	25344	25331	25322
2	64	6	11.469	25394	25322	25312	25312
1	128	2	125.267	25336	25312	25281	25281

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.