Oma results 1ajsA
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Information
| Number of sequences | 4 |
| Longest sequence | 387 |
| Average identity | 15 |
| | |
| best oma cost | 38473 |
| at segment width | 128 |
| time[s] | 2505 |
| mem[pages] | 49436 |
| mem[MB](8kb/page) | 386 |
Alignment
# LPVVRKVEQRIANNSSLNHEYLP--ILGLAEFRTCASRLALGD-DSPALQEKRVGGVQ-SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS-PTWENHNGVFTTAGFKDIRSYRYW-----DTEKRGLDLQGFLSDL---ENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAY---QGF--ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSI--LRVLSQMQKIVRVTWSNPP---AQGARIVARTLSDPELFHEWTGNVKTMADRI----LSMRSELRARLEALKTPGTW-----NHITDQIGMFSF---TGLNPKQV-EYL-----INQKHIYLLPSG--RINMCGL--TTKNLDYVATSIHEAVTKIQ #
# HPEIVSVIGEYAGK--LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNE-AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ---TGV----GRTGTMFACQRDGVTPDI-----LTLSKTLGA-GLPLAAI-VTSAAIEER--AHELGYLFYTTHVS-DPLP---AAVGLRVLDVVQRDGLVARANVMGDRLRRGL----LDLMERFDC-IGDVRGRGLL--LGVEIVKDRRTKEPA---DGLGAKITRECMNLGLSMNIVQLPGMGGVF-RIA-PPLTVSEDEIDLGLSLLGQAIERAL #
# HPEVIEALKVAMEK---GTSFGA--PCALENVLAEMVNDAVPSIEMVRFVNSGTEACM-AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKA-GSGVATLGLPSSPGVPKKTTANTL-----TTPYNDLEAVKALFA----ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVM---TGF-----RIAYGGVQEKFGVTPDL-----TTLGKIIGG-GLPVGAY-GGKREIMQL--VAPAGPMYQAGTLSGNPLA---MTAGIKTLELLRQPGTYEYLDQITKRLSDGL----LAIAQETGHAACGGQVSGMF-----GFFFTEGPVHNY---EDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSAL- #
# AMSDHQWAAMITGD----EAYAG--SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL--NGCKAINIVTEKAF-DSETYDDW-----KGDFDIKKLKENIAQ----HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKLDP-LLNIGGL-VAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFL-LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA #
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 7 | 2 | 254 | 7.781 | 40084 | 39300 | | 38852 | 38852 |
| 6 | 4 | 126 | 3.879 | 39348 | 38852 | | 38752 | 38752 |
| 5 | 8 | 62 | 2.372 | 39000 | 38752 | | 38670 | 38670 |
| 4 | 16 | 30 | 1.632 | 38750 | 38670 | | 38657 | 38638 |
| 3 | 32 | 14 | 7.741 | 38638 | 38638 | | 38599 | 38599 |
| 2 | 64 | 6 | 32.208 | 38599 | 38599 | | 38517 | 38517 |
| 1 | 128 | 2 | 2445.502 | 38517 | 38517 | | 38473 | 38473 |
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Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.
