Oma results 1gowA

back to summary.

Information

Number of sequences	4
Longest sequence	481
Average identity	31

best oma cost	45328
at segment width	128
time[s]	102
mem[pages]	3246
mem[MB](8kb/page)	25

Alignment

# MYS-FPNSFRFGWSQAGFQSEMGTPGSEDPNTDWYKWVHD-PENMAAGLVSGDLPENGPGYWGNYKTFHDNAQKMGLKIARLNSEWSRQFPNPLPRPQNFDESKQDVTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLYFIQNMYHWPLPLWLHDPIRVRRGDFTGPSGWLSTRTVYEFARFSAYTAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPG----YLSF-----ELSR---RAMYNIIQAHARAYDGIKS----VSKKPVGIIYANSSFQPLTDKDMEAVEMAENDNRW---WFFDAIIRGEITRGNEKIVRDDL-----------KGRLDWIGVNYYTRTVVKRTEK--GYVSLGGYGHGCERNS--VSLAGLPTSDF---------GWE-FFPEGLYDVLTKYWNRYHL--YMYVTENGIA---------DDA--DYQRPYYLVSHVYQVHRAINS-GADVRGYLHWSLADNYEWASGFSMRFGLLKVDYNTK-RLYWRPSALVYREIATNG #
# MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLED------NYWYTAEPASD---FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG--------------------------YGE-VNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-----GDF------LNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGK--FPPG-----IKY-----DLAK-VFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAE-NGGELDLRDEDFQALDAAKDLNDFLGINYY--MSDWMQAFDGETEIIKYQIKGVGRRVAPDYVP------RWI-IYPEGLYDQIMRVKNDYPNYKKIYITENGLG-YKDEFV--DNTVYDDGRIDYVKQHLEVLSDAIAD-GANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQ-ERYPKKSAHWYKKLAETQ #
# NRSCFAPGFVFGTASSAFQYEGAAFEDGKGPSIWDTFTHKYPEKI-KDRTNGDVAID---EYHRYKEDIGIMKDMNLDAYRFSISWPRVLPKG------------------------KLSGG-VNREGINYYNNLINEVLANGMQPYVTLFHWDVPQALEDEY----RGF------LGRNIVDDFRDYAELCFKEFGDRVKHWITLNEPWGVSMNAYAYGT--FAPGRCSDWLKLNCTGGDSGREPYLAAHYQLLAHAAAARLYKTKYQASQNGIIGITLVSHWFEP-ASKEKADVDAAKRGLDFMLGWFMHPLTKGRYPESMRYLVRKRLPKFSTEESKELTGSFDFLGLNYYSSYYAAKAPR--IPNARPAIQTDSLINAT-FEHNGKPLGPMAAS------SWLCIYPQGIRKLLLYVKNHYNN-PVIYITENGRNEFNDPTLSLQESLLDTPRIDYYYRHLYYVLTAIGD-GVNVKGYFAWSLFDNMEWDSGYTVRFGLVFVDFKNNLKRHPKLSAHWFKSF-LKK #
# NSSSFEADFIFGVASSAYQIEGTI---GRGLNIWDGFTHRYPDKSGPDHGNGDTTCD---SFSYWQKDIDVLDELNATGYRFSIAWSRIIPRG------------------------KRSRG-VNQKGIDYYHGLIDGLIKKGITPFVTLFHWDLPQTLQDEY----EGF------LDPQIIDDFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSAL--DAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYT-HQGGKIGPTMITRWFLPYNDTDRHSIAATERMKQFFLGWFMGPLTNGTYPQIMIDTVGARLPTFSPEETNLVKGSYDFLGLNYYFTQYAQPSPNPVNATNHTAMMDAGAKLTY-INASGHYIGPLFESDGGDGSSNIYYYPKGIYSVMDYFKNKYYN-PLIYVTENGISTPGSENR--KESMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLAWALGDNYEFNNGFTVRFGLSYINWNNVTDRDLKKSGQWYQKF-ISP #

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
8	2	284	8.436	46729	46097	45610	45610
7	4	254	7.692	46274	45610	45610	45610
6	8	126	3.948	45978	45610	45537	45537
5	16	62	2.142	45673	45537	45471	45375
4	32	30	1.342	45415	45375	45375	45375
3	64	14	2.860	45391	45375	45374	45374
2	128	6	69.151	45374	45374	45328	45328

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.