Oma results 1lvl
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Information
| Number of sequences | 4 |
| Longest sequence | 449 |
| Average identity | 19 |
| | |
| best oma cost | 44175 |
| at segment width | 64 |
| time[s] | ? |
| mem[pages] | 0 |
| mem[MB](8kb/page) | 0 |
Alignment
: QQTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQ--VEVDGQRIQCEHLLLATGS-SSVELPMLPLGGPVISSTEAL-APKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-DSELTAPVAESLKKLGIALHLGHSVEGYENG-----CLLANDGKGGQLRLEADRVLV----AVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNV----WAIGDVAG--EPMLAHRAMAQGEMVAEII----AGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFP--FAANG-RAMSLESKSGFVRVVARRDNHLILGWQAVGVA-VSELSTAFAQSLEMGAC-LEDVAGTIH---A :
: VASY--DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA---VHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSF-DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI----YAVGDVCG--KALLTPVAIAAGRKLAHRLFEYKEDSKLDY--NNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMY-HAVTKRKTKCVMKMVCANKEEKVVGIHMQGLG-CDEMLQGFAVAVKMGAT-KADFDNTVA---I :
: M-----KVIVLGSSHGGYEAVEELLNL-HPDAEIQWYEKGD----FISFLSAGM-QL----YLEGKVKDVNSVRY-MTGEKMESRGVNVFSNTEIT---AIQPKEHQVTVKDLVSGEERVENYDK--LIISPGAVP---FELDIPG-KDLDNIYLMRGRQWAIKLKQK-TVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAVGV----RPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVGDATLIKYNPADTEV--NIALATNARKQGRFAVKNL----EEPVKPF-PGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMT-IEDLAYADFFFQP :
: AGR---KVVVVGGGTGG-ATAAKYIKLADPSIEVTLIEPNTDY--YTCYLSNEV-------IGGDRKLESIKHGY----DGLRAHGIQVVHDSATG---IDPDKKLVKTAGGAEFGYDRCVVAPG--IELIYDKIE---GYSEEAA-AKLPHAW-KAGEQTAILRKQL-EDMADGGTVVIAPPAAPFRCPPGPYER-ASQVAYYLKAHKPM----SKVIILDSSQTFSKQSQFSKGWERLYGFGTE-----NAMIEWHPGPDSAVVKVDGGE----MMVETAFGDEFKADVINLIPPQR-AGKIAQIAGLTNDAG----WCPVDIKTFESSIHKGIHVIGDASIANPM------PKSGY--SANSQGKVAAAAVVVLLKGEEPGTPSYLN---TCYS--ILAPA-YGISV---AAIYRPNADGSAIESVPDSGGVTP-VDAPDWVLEREVQYAYSWYNNIVHDTF---G :
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 7 | 2 | 254 | 8.044 | 45748 | 45012 | | 44641 | 44641 |
| 6 | 4 | 126 | 3.886 | 45041 | 44641 | | 44607 | 44607 |
| 5 | 8 | 62 | 2.128 | 44759 | 44607 | | 44568 | 44568 |
| 4 | 16 | 30 | 1.381 | 44632 | 44568 | | 44484 | 44382 |
| 3 | 32 | 14 | 2.520 | 44430 | 44382 | | 44265 | 44261 |
| 2 | 64 | 6 | 128.139 | 44285 | 44261 | | 44175 | 44175 |
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Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.
