Oma results 1pamA
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Information
| Number of sequences | 5 |
| Longest sequence | 572 |
| Average identity | 18 |
| | |
| best oma cost | 86482 |
| at segment width | 32 |
| time[s] | ? |
| mem[pages] | 0 |
| mem[MB](8kb/page) | 0 |
Alignment
: TDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGITAI-WISQPVENIYSVINYSGVNNTAYHGYW---ARDFKKTNP---AY-----GTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN-LL-GGYTNDTQNLFHHYG----GTDFSTIENGIY-------KNL------YDLADLNHNNSSV-------DVYLKDAIK------------MWL--DLGVDGIRVDAV--KHMPFGWQKSFMATINNYK--------PVFT--FGEWFLGVNEISPEYHQFANESGMSLLDFR--FAQKARQVFRD----NTDNMYGLKAMLEGSEVD------YAQVNDQVTFIDNHDMERFHTSNG----DRRKLE-----QALAFTLTSR-GVPAI-----YYGSEQYMSGGNDPD---NRARLPSFSTTTTAYQVIQKLAPLRKSNPAIA----YGSTHERWINNDVII--YERKFGNNVAVVAI---NRNMNTPASITGLVTSLPRG-SYNDVLGGIL--NGNTLTVGAGG----AASNFTLAPGGTAVWQYTTDATTPIIGN------- :
: GR---TSIVHLFEW-------R------------------WVDIALE-CERYLAPKGFGGV-QVSPPNENVAI----HNPFRPWWERYQ---PVSYKLCTR----S-----GNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGS----RDFPAVPYSGWDFNDG---KCKTGSGDIENY-------NDATQVRD-CRLSGL-LDLALG-------KDYVRSKIA----EYM-----NHL-IDIGVAGFRIDAS--KHMWPGDIKAILDKLHNLNSNWFPEGSKPFI--YQEVIDLGGEPIKS-SDYFGNG--RVTEFK--YGAKLGTVIRKWN--GEKMSY-LKNWGEGWG--------FMPSDRALVFVDNHDNQRGHGAGGASILTFWDAR--LYKMAVGFMLAHPYGFTRVMSS--YRWPR-YFENGKDVN---DWVGPPNDNGVTKEVTINPDTTCGNDWVCEHR---WRQIRNMVNFRNVVDGQPFTNWYDNGSNQVAF---GRGNRGFIVFNN--DDWTFSLTLQTGLPAGTYCDVISGDKINGNC---TGIKIYVSDDGKAHFSISNSAEDPFIAIHAESKL- :
: GD---EIILQGFHWNVVREAPN---------------D--WYNILRQ-QAATIAADGFSAI-WMPVPWRDFSS--WSDGSKSGGGEGYF---WHDFNKNGR----Y-----GSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGG---DADLNTGHPQVYGMFR---DEFTNLRSQYGAGGFRFDFV---------RGYAPERVN------------SWM-TDSADNSFCVGQL------------W-KGPSEYP------NWD-WR--NTASW---QQII---KDWSDRA--KCPVFD--FALKERM--------QNGSIADWKHGLNGNPD-------PRWREVAVTFVDNHDTGYSPGQNGGQ--HHWALQDGLIRQAYAYILTSP-GTPVV-----YWDHM-Y-----------DWGYGDFIRQL-----IQVRRAAGVRADSAIS----FHSG----YSGLVAT----VSGSQQTLVVAL---NSDLGNPGQVAS--GSFSEA-----VNASNG--QVRVWRSGTGS----GGGE--PGALVSVSFRCDNGATQMGDSVY------ :
: DV-IYEVHVRGFTEQDTSIPAQ-------------YRG--TYYGAGL-KASYLASLGVTAVEFLPVQETQNDA--NDVVPNSDANQNYWGYMTENYFSPDR-RYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRG-LDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIV---DSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAV--DQRRAA----RTGMAFEMLSA-GTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTF--TLPAPP--SGTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK :
: LN---GTLMQYFEWYMPNDGQH------------------WKRLQND--SAYLAEHGITAV-WIPPAYKGTSQ----ADVGYGAYDLYD---LGEFHQKGTVRTKY-----GTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNR-VISGEHLIKAWTHFHFPGR---GSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAYDYLMYAD-----IDYDHPDVAAEIKRWG-----TWYANELQLDGFRLDAV--KHIKFSFLRDWVNHVREKT------GKEMFT--VAEYW---QNDLGALENYLNKT--NFNHSV--FDVPLHYQFHAAS--TQGGGYDMRKLLNSTVV-------SKHPLKAVTFVDNHDTQPGQSLESTV--QTWFKP-----LAYAFILTRESGYPQV-----FYGDM-Y-------G---TKGDSQREIPA-----LKHKIEPILKARKQYA----YGAQHDY-FDHHDIV----GWTREGDSSVA----NSGLAALITDGP--GGAKRM-----YVGRQN--AGETWHDITGN----RSEPVVINSEGWGEFHVNGGSVSIYVQ-------- :
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 8 | 2 | 351 | 10.327 | 90693 | 88773 | | 87470 | 87470 |
| 7 | 4 | 254 | 7.894 | 88990 | 87470 | | 87365 | 87365 |
| 6 | 8 | 126 | 4.310 | 88389 | 87365 | | 87181 | 87181 |
| 5 | 16 | 62 | 4.242 | 87813 | 87181 | | 86918 | 86569 |
| 4 | 32 | 30 | 63.874 | 86713 | 86569 | | 86503 | 86482 |
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Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.