Oma results 1pkm

back to summary.

Information

Number of sequences	4
Longest sequence	449
Average identity	34

best oma cost	42100
at segment width	128
time[s]	31
mem[pages]	1130
mem[MB](8kb/page)	9

Alignment

# VALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPEIRTGTTTNDV-DYPIPPNHEMIFTTDDKYAKACDDKIMYVD--YKNITKVISAGRIIYVDDGVLSFQVLEVVD-KDTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDKEDLRFGVK--NGVHMVFASFIRTANDVLTIREVLGEQGKD-VKIIVKIENQQGVNN---FDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDD---MRNCTPKP---TSTTETVAASAVAAVFEQKAKAI---IVLSTSGTTPRL--VSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKK-GDTYV #
# AALIEEGANVFRFNFSHGDHPEQGARMATVHRAEEI-AGHKVGFLLDTKGPEMRTELFTDGADSISVVTGDKFRVATKQGLKSTPELIALNVGG-LADIFDDVEIGQTILIDDGKLGLSLTGKDATRAEFEVEAQNDGVIGKQKGVNIPNTKIPFPALAERDDADIRFGLSPGQGINFIAISFVRTANDVKEVRRICEETGPNHVQLLAKIENQQGIEN---LDEIIEAADGIMIARGDMGIEVPFEMVPVYQKLIISKVNKAGKIVVTATNMLESMTYNPRATRSEISDVFNAVIDGTDATMLSGESANGKYPRESVRTMATVNKNAQTMLK---EYGR---LHPERYDK---STVTEVVAASVKNAAEAMDVKLI---VALTESGNTARL--ISKHRPDADILAITFDEKVERGLMINWGVIPMMTEKPA------STDDMFEVAEKVALASGLVEA-GDNII #
# EKIIAAGANVVRMNFSHGTPDDHIGRAERVRSIAKK-LGKTVAILGDLQGPKIRVSTFKDG--KIFLNVGDKFILDAELPKGEGTQESV-GLD--YKTLPQDVVPGDILLLDDGRVQLKVLSTDG--AKVFTEVTVGGPLSNNKGINKLGGGLSADALTEKDKADIITAAR--IGVDFLAVSFPRSSADLNYARELAQQAGLN-AKIVAKVERAETVNDEAAMDDIILASDVIMVARGDLGVEIGDPELVGVQKKLIRRSRQLNRAVITATQMMESMISNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMASVCLGAEKMP----SINV---SRHRMDKE-FETIEESVAMSAMYAANHKMGVAAI---VTLSSTGRTPLL--MSRISSGLPIFALSRNQETLNLCALYRGVTPIYHGEES------RTEAGAKAAPQSLKEKGYLST-GDLVL #
# KAIIKSGVSVIRLNFSHGTHEEQQVRIKIVRDVAKA-MNIPVSIMLDTNGPEIRIVETKKE--GLKITKDSEVIINTMSKMIASDNFAVSDASGKYQNMVNDVNIGQKILVDDGKLTLVVRVTDKQHNQVICVAKNDHTVFTKKRLNLPNAQYSIPFLSEKDLKDIDFGLS--QGIDYIAASFVNTVADIKQLRDYLKLKNAGSVKIIAKIESNHALNN---IDKIIKASDGIMVARGDLGLEIPYYQVPYWQRYMIKACRFFNKRSITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETASGLYPLNAVAVMQKIDKQSETFFDY--QYNVNYYLKNSTAKSRFWHNVVNLPLTKKTVPKRKLVNSAFKYDFIVYPTNNINRIYALSNARLAAAVIILTNNKRVYTGHGVDYGIFCYLIDKNP------NQLTKAELIELAWKAINHYQAYGDLEK #

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
8	2	255	7.606	42621	42365	42163	42163
7	4	254	7.399	42419	42163	42163	42163
6	8	126	3.639	42283	42163	42163	42163
5	16	62	2.070	42219	42163	42156	42122
4	32	30	1.196	42186	42122	42122	42122
3	64	14	1.057	42154	42122	42117	42117
2	128	6	1.772	42117	42117	42100	42100

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.