Oma results actin
back to summary.
Information
| Number of sequences | 5 |
| Longest sequence | 395 |
| Average identity | 45 |
| | |
| best oma cost | 56940 |
| at segment width | 128 |
| time[s] | 26 |
| mem[pages] | 1748 |
| mem[MB](8kb/page) | 14 |
Alignment
# MA--DGGED--IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVVGRPRHTGV-MVGMGQ-KDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKISHHTFY-NELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVLSRLRSCLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTER-GYMFTTTAT--GMSYMKEKLAYVALVMSKSWRLPRARLL---IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGSCYASMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWISKGEYDESGPSIVHRKC---F #
# MS--EEENA--KEAIVVDNGSGVVKAGFAGENQPCSVFPSVV-AKPKTKQV-IVGGAGNKDCFVGDERQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTFY-NELRIET-ENHPVLLTEAPLNPKQNRENMCRIMFEEYDFPSMYI--QIQAVLSLYSAGRTTGIVVDSGDGVTHVVPIFEGYQIPHAIEKILLAGRDLTDYMCRILKDD-DYHFETTAEKETVRDIKEKLCYVADDYEAELKKAGEGGE-------LEESYALPDGRPLKISTQR-FQCPEFLFQPDLGGRECKSVHQLTYDSIMTCDLDVRKDLYANIILSGGTTMFPGLG-ERLYKEMKDL-----------APQTMKVKVIASPDRKYAVWRGGSTLAKL--STFAGMWVTKEDYAEFGESIVHRKC---I #
# ME-FNDVLT--NQPICIDNGSGVIKAGFAGEDQPKSFFPSYV-GRPKHLKI-MAGAIE-GDIFIGNKAQELRGLLKIKYPIEHGIVVDWDDMERIWQFIYT-EELKTVS-EEHPVLLTEAPLNPRTNRDQAAQVFFETFNVPALFT--SIQAVLSLYASGRTTGVVLDSGDGVTHAVPIYEGFAMPSAIRRIDIAGRDVTEYLQLLLRKS-GTIFHTSAEKEIVRIIKEKCSYVTLDPRKEEKEWINASISGGKDYTKEEEFKLPDGNVLRLGAER-FRAPEILFDPEIIGSEYSGIHQVVVDAISRVDLDLRKSLFGNIVLSGGSTLTRGFG-DRLLSEIRRL-----------AVKDVKIKIFAPPERKYSTWIGGSILASL--STFRKMWVSAEEYQE-DPDIIHRKS---I #
# MDQLSDSYALYNQPVVIDNGSGIIKAGFSGEERPKALEYCLV-GNTKYDKV-MLEGLQ-GDTFIGNNAQKLRGLLKLRYPIKHGVVEDWDSMELIWSYVLN-EVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYV--SNPAVLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIGGADITEQLQFQLRKSAGVSLFSSSEREIVRTMKEKVCYLAKNIKKEEEKYLQGTQ------DLISTFKLPDGRCIEVGNDR-YRAPEILFSPQIIGLGYDGLSDMCMQSIWKVDLDLRKPLLSSIILSGGTTTLKGFG-DRMLWDLEAL-----------TKGTSKIKIIAPSERKYTTWIGGSILTGL--STFQRLWTKKSDWLE-DSTRVYSNL---M #
# MD--SQG----RKVIVVDNGTGFVKCGYAGTNFPAHIFPSMV-GRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDP-KECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYV--AVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAGRDITKYLIKLLLQR-GYNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTV-------LSQQYTLPDGRVIRLGGER-FEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLP-SRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGGIARCMAKLGIKA #
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 7 | 2 | 254 | 7.412 | 57712 | 57376 | | 57111 | 57111 |
| 6 | 4 | 126 | 3.281 | 57351 | 57111 | | 57079 | 57079 |
| 5 | 8 | 62 | 2.251 | 57111 | 57079 | | 57045 | 57045 |
| 4 | 16 | 30 | 1.481 | 57045 | 57045 | | 57012 | 56979 |
| 3 | 32 | 14 | 1.357 | 56979 | 56979 | | 56952 | 56952 |
| 2 | 64 | 6 | 1.703 | 56952 | 56952 | | 56940 | 56940 |
| 1 | 128 | 2 | 3.778 | 56940 | 56940 | | 56940 | 56940 |
|
Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.
