Oma results arp
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Information
| Number of sequences | 5 |
| Longest sequence | 418 |
| Average identity | 29 |
| | |
| best oma cost | 64154 |
| at segment width | 128 |
| time[s] | 612 |
| mem[pages] | 11608 |
| mem[MB](8kb/page) | 91 |
Alignment
# MTDSLHNAPIVLDNGSGTIRAGFAGDDVPKCHFPSFVG---RPK-----HLRVLAGALEGEVFIGQKAASELRGLLKIRYPLEHGIVTDWDDMEKIWAYVYD-EGLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQAVLSLYA-----SGRT-----TGVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTLLRKSGYVFHTSAEKEVVRLIKESVTYVAHDPRKEEKEWAAAKMDPAKIAEYVLPD---------------------GNKLKIGAERFRAPEILFDPEIIGLEYPG-VHQIVVDSINRTDLDLRRDLYSNIVLSGGSTLTKGFGDRLLTEVQKLA----------------VKDMRIKIFAPP-ERKYSTWIGGSILAGLSTFRK-MWVSIDDWHENP------DIIHTKFT- #
# MDRSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVG---RPM---IRAVNKIGDIEVKDLMVG-DEASQLRSLLEVSYPMENGVVRNWDDMCHVWEYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAAWTLYA-----QGLI-----SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRL---ALETTVLVESYTLPD---------------------GRVIKVGGERFEAPEALFQPHLINVEGPG-IAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLY-----LERVLKNDTEKLAKFKIRIEDPP-RRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQG--LKVLQKLQKISH- #
# MAGRL--PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG-DEAIEKPTYATKW-PIRHGIVEDWDLMERFMEQVIF-KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAA--SWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKY--DTDGSKWIKQYTGIN------AISKK----------EFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHH-MQRYAVWFGGSMLASTPEFYQ-VCHTKKDYEEIGPSICRHNPVFGVMS- #
# MAN----AVVVLDNGAHTAKVGLANQDEPH-VVPNCIM---KAK---SERRRAFVGNQI-------DECRDTSALYYIL-AFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYRH--LNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVG-IPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALV----------------PDDLEVSLICPE-DPVRYAWYGGKEVATSPNFEE-FVYTQDDYEEYG--------FQGINQR #
# MSL----TTIIFDNGGHNMKIGTIDSESPR-LVPNSIV---KAK---HEKKRVFVAHEQ-------EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKH-----SNKINNEK-CAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYRQ--LNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQGNTTMKRYIMPDFHSTFRGVVKDVKEPHDPQ--IPSIHLGVERFAIPEILFNPSDIDIDQCG-VAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSML----------------PAEYGLNVSNDVINPQTHSWHCGQELLTASKV---PWINRKDWDERGDSLEFSNFFQTLVQ- #
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 7 | 2 | 254 | 8.153 | 65829 | 65013 | | 64504 | 64504 |
| 6 | 4 | 126 | 4.105 | 64912 | 64504 | | 64492 | 64492 |
| 5 | 8 | 62 | 2.277 | 64724 | 64492 | | 64310 | 64310 |
| 4 | 16 | 30 | 1.787 | 64382 | 64310 | | 64208 | 64187 |
| 3 | 32 | 14 | 1.849 | 64211 | 64187 | | 64162 | 64162 |
| 2 | 64 | 6 | 7.156 | 64162 | 64162 | | 64161 | 64161 |
| 1 | 128 | 2 | 580.534 | 64161 | 64161 | | 64154 | 64154 |
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Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.
