Oma results glg
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Information
| Number of sequences | 5 |
| Longest sequence | 486 |
| Average identity | 31 |
| | |
| best oma cost | 74397 |
| at segment width | 64 |
| time[s] | ? |
| mem[pages] | 0 |
| mem[MB](8kb/page) | 0 |
Alignment
: M--SLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWVGLEYDGEIL-------Y-QSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETP--RYDNRYRDFKGTP-----PKGIEPVVRIKVPQNEVIGFNDGVKGEVK------VNTNELDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKAL---NFK--IPNFFHVPMILNE-EGQKLSKRHGATN--VMDYQEMGYLKEALVNFLARLGWSYQ------DKEVFSMQELLELFDPKDLNSSPSCFSWHKLNWLNAHYL--KNQSVQELLKLLKPFSFSDLSH--LNPTQLDRLLDALKERSQTLKELALKIDEV--LIAPVEYE-E-KVFKKLNQALVMPLLEKFKLELNKANF-NDESALENAMR-QIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEAL-FILGKTESVKRIE :
: M--EKIRTRYAPSPTGYLHVGGTRTAIFNFLLAKHFNGEFIIRIEDTDTERNIKEGINSQFDNLRWLGVIADESVYNPGNYGPYLQSQKLAVYKKLAFDLIEKNLAYRCFCSKEKLESDRKQAINNHKTP--KYLGHCRNLHSKKITNHLEKNDPFTIRLKINNEAEYSWNDLVRGQIT------IPGSALTDIVILKANGVATYNFAVVIDDYDMEITDVLRGAEHISNTAYQLAIYQAL---GFK-RIPRFGHLSVIVDE-SGKKLSKRDEKTTQFIEQFKQQGYLPEALLNFLALLGWHPQ-----YNQEFFNLKQLIENFSLSRVVSAPAFFDIKKLQWINANYI--KQLTDNAYFNFIDNYLDVKVDY--LKDKNREISL-LFKNQITHGVQINELIRES--FATKIGVE-NLAKKSHILFKNIKLFLEQLAKSLQGLEE-WKAEQIKTTIN-KVGAVFNLKGKQLFMPIRLIFTNKEHGPDLAHII-EIFDKESAINLIK :
: HPSLPVRTRFAPSPTGFLHLGSLRTALYNYLLARNTNGQFLLRLEDTDQKRLIEGAEENIYEILKWCNINYDETPI-------K-QSERKLIYDKYVKILLSSGKAYRCFCSKERLNDLRHSAMELKPPSMASYDRCCAHLGEEEIKSKLAQGIPFTVRFKSPERYP-TFTDLLHGQINLQPQVNFNDKRYDDLILVKSDKLPTYHLANVVDDHLMGITHVIRGEEWLPSTPKHIALYNAF---GWA--CPKFIHIPLLTTV-GDKKLSKRKGDMS--ISDLKRQGVLPEALINFCALFGWSPPRDLASKKHECFSMEELETIFNLNGLTKGNAKVDDKKLWFFNKHFLQKRILNPSTLRELVDDIMPSLESIYNTSTISREKVAKILLNCGGSLSRINDFHDEFYYFFEKPKYN-DNDAVTKFLSKNESRHIAHLLKKLGQLQEGTDAQEVESMVE-TMYYENGFSRKVTYQAMRFALAGCHPGAKIAAMI-DILGIKESNKRLS :
: PQAAKVRVRFCPSPTGVPHVGMVRTALFNWAYARHTGGTFVLRIEDTDADRDSEESYLALLDALRWLGLNWDEGPEVGGPYGPYRQSQRTDIYREVVAKLLATGEAYYAFSTPEEVEN-RHLAAGRNPKL--GYDNFDRDLTDAQFSAYLAEGRKPVVRLRMPDEDI-SWDDLVRGTTT------FAVGTVPDYVLTRASGDPLYTLVNPCDDALMKITHVLRGEDLLSSTPRQVALYQALIRIGMAERIPEFGHFPSVLGE-GTKKLSKREPQSN--LFAHRDRGFIPEGLLNYLALLGWAIA-----DDHDLFSLDEMVAAFDVVDVNSNPARFDQKKADAVNAEHI--RMLDSEDFAGRLRDYFTTHGYHIALDPANYEAGFVAAAQLVQTRIVVLGDAWDLLKFLNDDEYSIDSKAAAKELDADAGPVLDVACAVLDSLVD-WTTASIEDVLKVALIEGLGLKPRKVFGPIRVAATGALVSPPLFESL-ELLGRARSLQRLS :
: M------LRFAPSPTGDMHIGNLRAAIFNYIVAKQQYKPFLIRIEDTDKERNIEGKDQEILEILKLMGISWDKLV--------Y-QSHNIDYHREMAEKLLKENKAFYCYASAEFLEREKEKAKNEKRPF--RYSDEWATLEK-------DKHHAPVVRLKAPNHAV-SFNDAIKKEVK------FEPDELDSFVLLRQDKSPTYNFACACDDLLYKISLIIRGEDHVSNTPKQILIQQAL---GSN-DPIVYAHLPIILDEVSGKKMSKRDEASS--VKWLLNQGFLPVAIANYLITIGNKVP-------KEVFSLDEAIEWFSLENLSSSPAHFNLKYLKHLNHEHL--KLLDDDKLLELTS-----------IKDKNLLGLLRLFIEECGTLLELREKI-SL--FLEPKDIV---KTYENEDFKE--RCLALF-NALTSMDF-QAYKDFESFKK-EAMRLSQLKGKDFFKPLRILLTGNSHGVELPLIFPYIQSHHQEVLRLK :
Iteration
| Level | dcaL | #cuts | time [s] | U Bound | U /wo cg | | cost | cost2 |
| 8 | 2 | 262 | 8.465 | 75697 | 75201 | | 74640 | 74640 |
| 7 | 4 | 254 | 8.040 | 75240 | 74640 | | 74640 | 74640 |
| 6 | 8 | 126 | 4.045 | 74880 | 74640 | | 74566 | 74566 |
| 5 | 16 | 62 | 2.867 | 74718 | 74566 | | 74442 | 74419 |
| 4 | 32 | 30 | 1.810 | 74451 | 74419 | | 74419 | 74419 |
| 3 | 64 | 14 | 3.477 | 74419 | 74419 | | 74397 | 74397 |
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Picture of Iteration
Explanation of the key.
Picture of Watches
Explanation of the key.
