Oma results of: 1ajsA

back to summary.

Information

Number of sequences4
Longest sequence387
Average identity15
  
best oma cost38473
at segment width
time[s]?
mem[pages]0
mem[MB](8kb/page)0

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990614:1115)

Alignment

    : LPVVRKVEQRIANNSSLNHEYLP--ILGLAEFRTCASRLALGD-DSPALQEKRVGGVQ-SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS-PTWENHNGVFTTAGFKDIRSYRY-----WDTEKRGLDLQGFLSDL---ENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAY---QGF--ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSI--LRVLSQMQKIVRVTWSNPP---AQGARIVARTLSDPELFHEWTG----NVKTMADRILSMRSELRARLEALKTPGTW-----NHITDQIGMFSF---TGLNPKQV-EYL-----INQKHIYLLPSG--RINMCGL--TTKNLDYVATSIHEAVTKIQ :
    : HPEIVSVIGEYAGK--LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNE-AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ---TGV----GRTGTMFACQRDGVTPDI-----LTLSKTLGA-GLPLAAI-VTSAAIEER--AHELGYLFYTTHVS-DPLP---AAVGLRVLDVVQRDGLVARANV----MGDRLRRGLLDLMERFDC-IGDVRGRGLL--LGVEIVKDRRTKEPA---DGLGAKITRECMNLGLSMNIVQLPGMGGVF-RIA-PPLTVSEDEIDLGLSLLGQAIERAL :
    : HPEVIEALKVAMEK---GTSFGA--PCALENVLAEMVNDAVPSIEMVRFVNSGTEACM-AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKA-GSGVATLGLPSSPGVPKKTTANT-----LTTPYNDLEAVKALFA----ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVM---TGF-----RIAYGGVQEKFGVTPDL-----TTLGKIIGG-GLPVGAY-GGKREIMQL--VAPAGPMYQAGTLSGNPLA---MTAGIKTLELLRQPGTYEYLDQ----ITKRLSDGLLAIAQETGHAACGGQVSGMF-----GFFFTEGPVHNY---EDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMS-AL :
    : AMSDHQWAAMITGD----EAYAG--SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL--NGCKAINIVTEKAF-DSETYDD-----WKGDFDIKKLKENIAQ----HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKLDP-LLNIGGL-VAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFL-LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA :

Iteration

LeveldcaL#cutstime [s]U BoundU /wo cg costcost2
72254 7.4884011639300 3885238852
64126 3.6113937238852 3873338733
5862 2.1333898138733 3868338683
41630 1.3653876338683 3867038638
33214 24.2913863838638 3859538595
2646 35.4993859538595 3851738517
11282 2623.9173851738517 3847338473

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.