Oma results of: 1gowA

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Information

Number of sequences	4
Longest sequence	481
Average identity	31

best oma cost	45321
at segment width
time[s]	?
mem[pages]	0
mem[MB](8kb/page)	0

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990614:1115)

Alignment

    : MYS-FPNSFRFGWSQAGFQSEMGTPGSEDPNTDWYKWVHD-PENMAAGLVSGDLPENGPGYWGNYKTFHDNAQKMGLKIARLNSEWSRQFPNPLPRPQNFDESKQDVTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLYFIQNMYHWPLPLWLHDPIRVRRGDFTGPSGWLSTRTVYEFARFSAYTAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPG----YLSF-----ELSR---RAMYNIIQAHARAYDGIKS----VSKKPVGIIYANSSFQPLTDKDMEAVEMAENDNRW---WFFDAIIRGEITRGNEKIVRDDL-----------KGRLDWIGVNYYTRTVVKRTEK--GYVSLGGYGHGCERNS--VSLAGLPTSDF---------GWE-FFPEGLYDVLTKYWNRY--HLYMYVTENGIA---------DDA--DYQRPYYLVSHVYQVHRAINS-GADVRGYLHWSLADNYEWASGFSMRFGLLKVDYNTK-RLYWRPSALVYREIATNG :
    : MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLED------NYWYTAEPA---SDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG---------------------------YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHS-------N----GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGK--FPPG-----IKY-----DLAK-VFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAE-NGGELDLRDEDFQALDAAKDLNDFLGINYY--MSDWMQAFDGETEIIKYQIKGVGRRVAPDYVP------RWI-IYPEGLYDQIMRVKNDYPNYKKIYITENGLG-YKDEFV--DNTVYDDGRIDYVKQHLEVLSDAIAD-GANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQ-ERYPKKSAHWYKKLAETQ :
    : NRSCFAPGFVFGTASSAFQYEGAAFEDGKGPSIWDTFTHKYPEKI-KDRTNGDVA---IDEYHRYKEDIGIMKDMNLDAYRFSISWPRVLPKG-------------------------KLSGGVNREGINYYNNLINEVLANGMQPYVTLFHWDVPQALED-------EY---RGFLGRNIVDDFRDYAELCFKEFGDRVKHWITLNEPWGVSMNAYAYGT--FAPGRCSDWLKLNCTGGDSGREPYLAAHYQLLAHAAAARLYKTKYQASQNGIIGITLVSHWFEP-ASKEKADVDAAKRGLDFMLGWFMHPLTKGRYPESMRYLVRKRLPKFSTEESKELTGSFDFLGLNYYSSYYAAKAPR--IPNARPAIQTDSLINAT-FEHNGKPLGPMAAS------SWLCIYPQGIRKLLLYVKNHY-NNPVIYITENGRNEFNDPTLSLQESLLDTPRIDYYYRHLYYVLTAIGD-GVNVKGYFAWSLFDNMEWDSGYTVRFGLVFVDFKNNLKRHPKLSAHWFKSF-LKK :
    : NSSSFEADFIFGVASSAYQIEGTI---GRGLNIWDGFTHRYPDKSGPDHGNGDTT---CDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRG-------------------------KRSRGVNQKGIDYYHGLIDGLIKKGITPFVTLFHWDLPQTLQD-------EY---EGFLDPQIIDDFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSAL--DAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYT-HQGGKIGPTMITRWFLPYNDTDRHSIAATERMKQFFLGWFMGPLTNGTYPQIMIDTVGARLPTFSPEETNLVKGSYDFLGLNYYFTQYAQPSPNPVNATNHTAMMDAGAKLTY-INASGHYIGPLFESDGGDGSSNIYYYPKGIYSVMDYFKNKY-YNPLIYVTENGISTPGSENR--KESMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLAWALGDNYEFNNGFTVRFGLSYINWNNVTDRDLKKSGQWYQKF-ISP :

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
8	2	284	8.097	46729	46097	45610	45610
7	4	254	7.081	46274	45610	45610	45610
6	8	126	3.755	45978	45610	45537	45537
5	16	62	2.216	45673	45537	45471	45375
4	32	30	1.474	45415	45375	45375	45375
3	64	14	3.021	45391	45375	45374	45374
2	128	6	71.130	45374	45374	45328	45328
1	256	2	1728.109	45328	45328	45321	45321

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.