Oma results of: 1pkm

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Information

Number of sequences4
Longest sequence449
Average identity34
  
best oma cost42081
at segment width
time[s]970.3
mem[pages]23211
mem[MB](8kb/page)181

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990614:1115)

Alignment

# VALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPEIRTGTTTNDV-DYPIPPNHEMIFTTDDKYAKACDDKIMYVD--YKNITKVISAGRIIYVDDGVLSFQVLEVVD-KDTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDKEDLRFGVK--NGVHMVFASFIRTANDVLTIREVLGEQGKD-VKIIVKIENQQGVNN---FDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAY---LPNYDDMRNCTPKPTSTTETVAASAVAAVFEQ----KAKAIIVLSTSGTTPRL--VSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKK-GDTYV #
# AALIEEGANVFRFNFSHGDHPEQGARMATVHRAEEI-AGHKVGFLLDTKGPEMRTELFTDGADSISVVTGDKFRVATKQGLKSTPELIALNVGG-LADIFDDVEIGQTILIDDGKLGLSLTGKDATRAEFEVEAQNDGVIGKQKGVNIPNTKIPFPALAERDDADIRFGLSPGQGINFIAISFVRTANDVKEVRRICEETGPNHVQLLAKIENQQGIEN---LDEIIEAADGIMIARGDMGIEVPFEMVPVYQKLIISKVNKAGKIVVTATNMLESMTYNPRATRSEISDVFNAVIDGTDATMLSGESANGKYPRESVRTMATVNKNAQTM------LKEYGRLHPERYDKSTVTEVVAASVKNAAEAM----DVKLIVALTESGNTARL--ISKHRPDADILAITFDEKVERGLMINWGVIPMMTEKPA------STDDMFEVAEKVALASGLVEA-GDNII #
# EKIIAAGANVVRMNFSHGTPDDHIGRAERVRSIAKK-LGKTVAILGDLQGPKIRVSTFKDG--KIFLNVGDKFILDAELPKGEGTQESV-GLD--YKTLPQDVVPGDILLLDDGRVQLKVLSTDG--AKVFTEVTVGGPLSNNKGINKLGGGLSADALTEKDKADIITAAR--IGVDFLAVSFPRSSADLNYARELAQQAGLN-AKIVAKVERAETVNDEAAMDDIILASDVIMVARGDLGVEIGDPELVGVQKKLIRRSRQLNRAVITATQMMESMISNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMASVCLGAEKM------PSINVSRHRMDKEFETIEESVAMSAMYAANHKM---GVAAIVTLSSTGRTPLL--MSRISSGLPIFALSRNQETLNLCALYRGVTPIYHGEES------RTEAGAKAAPQSLKEKGYLST-GDLVL #
# KAIIKSGVSVIRLNFSHGTHEEQQVRIKIVRDVAKA-MNIPVSIMLDTNGPEIRIVETKKE--GLKITKDSEVIINTMSKMIASDNFAVSDASGKYQNMVNDVNIGQKILVDDGKLTLVVRVTDKQHNQVICVAKNDHTVFTKKRLNLPNAQYSIPFLSEKDLKDIDFGLS--QGIDYIAASFVNTVADIKQLRDYLKLKNAGSVKIIAKIESNHALNN---IDKIIKASDGIMVARGDLGLEIPYYQVPYWQRYMIKACRFFNKRSITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETASGLYPLNAVAVMQKIDKQSETFFDYQYNVNYYLKNSTAKSRFWHNVVNLPLTKKTVPKRKLVNSAFKYDFIVYPTNNINRIYALSNARLAAAVIILTNNKRVYTGHGVDYGIFCYLIDKNP------NQLTKAELIELAWKAINHYQAYGDLEK #

Iteration

LeveldcaL#cutstime [s]U BoundU /wo cg costcost2
82255 7.6714262142365 4216342163
74254 7.3994241942163 4216342163
68126 3.8564228342163 4216342163
51662 2.1134221942163 4215642122
43230 1.2854218642122 4212242122
36414 1.0994215442122 4211742117
21286 2.1844211742117 4210042100
12562 10.9694210042100 4210042100
05120 926.6344210042100 4208142081

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.