Oma results of: 1sesA

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Information

Number of sequences5
Longest sequence442
Average identity33
  
best oma cost67140
at segment width
time[s]3122.2
mem[pages]37730
mem[MB](8kb/page)295

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990614:1115)

Alignment

# MVDLKRLRQE----PEVFHRAIREKG-VALDLEALLALDREVQELKKRLQEVQTERNQVAKRV--PK--APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG-GEEANREIKRVG--GPPEFSFPPLD-----------HVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARR-GFLPMTLPSYAREKAFLGTGHFPATRDQVWA---IAETDLY------LTGTAEVVLNALHSGEIL--PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEG---------RYRETHSCSALLDWQARRANLRY--R-DPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMGKEVLEPC #
# MLDPNKLRNN----YDFFKKKLLERNNVEQLLNQFIQTDKLMRKNLQQLELANQKQSLLAKQV------AKQKDNKKLLAESKELKQKIENLNNAYKDSQNISQDLLLNFPNIAHESVPVGKNSEANLELLKEG--RKPVFDFKPLP-----------HRELCEKLNLVFADKATKISGTRFVAYTDKAAKLLRAITNLMIDLNKSK--YQEWNLPVVINELSLRSTGQLPKFKDDVFK---LENTRYY------LSPTLEVQLINLHANEIF--NEEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQFQKTELVKFCKP--ENAINELEAMVRDAEQILKALKLPFRRLLLCTGDMGFSAEKTYDLEVWMAASN---------EYREVSSCSSCGDFQARRAMIRY--KDNINGKNSYVATLNGTALSIDRIFAAILENFQTKDGKILIPQALKKYLDFDTIK-- #
# MLDINQFIEDKGGNPELIQSRQKARNASVEIVDEIISDYKDWVTRFKELDELNKKFNKLQKDIGLKK--NFKEDASGLLAEKEKLTQQKKELTEKEQQEDKDLKKKVFQVGNIVHPSVVVS-NDEENNELVRTW--KPEDLEAVPIASVTGKPASLGSHHEILLRLDGYDPDRGVKICGHRGYFFRNYGVFLNQALINYGLQFLAAK-GYIPLQAPVMMNKELMSKTAQLSEFDEELYK-IDVGEDEKY------LIATSEQPISAYHSGEWFKPEQEQLPIHYVGYSSCFRREAGSHGKDAWGVFRVHAFEKIEQFVITEP--EKSWEEFEKMISYSEEFYKSLKLPYRIVGIVSGELNNAAAKKYDLEAWFPYQK---------EYKELVSCSNCTDYQSRNLEIRCGIKMGKDREKKYVHCLNSTLAATQRALCCILENYQTEDG-LVVPEVLRKYIPGE----- #
# MLSRQFVREH----PETVRDAIERKGVTGVDLDEILDIDEEWRELKAEGDGLRQERNEVSSKIGELKQDGKDEEAQEAIDRSQELKDELQDIEERADELESQLEEALLELPNIPHESVPTGEGEADNVERYREGFDDLRDLPDEVVP-----------HYDLGEDLDLLDFERGAKVSGGGYQFVKGEGARLEHALIQFMLDVHREQ-EYVDVLPPIPVNSDSMEGTGQLPKFAEDAYR-VGARQDDDYDSDDLWLLPTAEVPVTNMYRGEIL--LDDDLPVKHQAFSPNFRREAGEHGTETRGYVRVHQFHKVELVNFVRP--ENSYDRLESLLDEAAEVLDRLELPYRVLDMCTGDMGFTQAKKYDIEVWAPGDDMEDGPDRGGRWLEVSSVSNFEDFQARRAGLRY--RPERHESADYLHTLNGSGLAVPRVLVAIMEYYQNDDGTITVPEPLRPYMGGQEV--- #
# MIDPNLLRNN----LAEVAEKLKVKRNFMLDTEKLTALEDQRKNLQVTTENLQAERNARSKAIGAAK--ARGEDIAPLLAEMDDMGNQLTEAKAQLDAVLAEINQIALSIPNLPADEVPLGKDDTENKEILRWG--TPRTFDFEVKD-----------HITLGEEANGLDFAAGAKLAGARFAVMKGQIAKMHRALAQFMLDLHTEQHGYLETYVPYLVNHATLYGTGQLPKFGEDLFHTLALEGEQPYA-----LIPTAEVPVTNLVRDVII--DEAELPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVDP--DKSMEALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQN---------TYREISSCSNMWDFQARRMQARC--KAKGDKKTRLVHTLNGSGLAVGRTLVAVLENYQNADGSITVPEELRPYMG------- #

Iteration

LeveldcaL#cutstime [s]U BoundU /wo cg costcost2
72254 7.4646789967403 6730567305
64126 3.4256743367305 6729467294
5862 1.9756735867294 6726467264
41630 1.5636729667264 6720567154
33214 1.5596721867154 6715367153
2646 3.4466715367153 6715367153
11282 31.7076715367153 6715067150
02560 3066.3416715067150 6714067140

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.