Oma results of: actin

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Information

Number of sequences5
Longest sequence395
Average identity45
  
best oma cost56938
at segment width
time[s]102.9
mem[pages]3892
mem[MB](8kb/page)30

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990614:1115)

Alignment

# MA-DGGED----IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVVGRPRHTGV-MVGMGQ-KDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKISHHTFY-NELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVLSRLRSCLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTER-GYMFTTTA--TGMSYMKEKLAYVALVMSKSWRLPRARLL-------VEKNYELPDGQVITIGAVRGSGCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGSCYASMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWISKGEYDESGPSIVHRKC---F #
# MS-EEENA----KEAIVVDNGSGVVKAGFAGENQPCSVFPSV-VAKPKTKQV-IVGGAGNKDCFVGDERQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTFY-NELRIET-ENHPVLLTEAPLNPKQNRENMCRIMFEEYDFPSMYI--QIQAVLSLYSAGRTTGIVVDSGDGVTHVVPIFEGYQIPHAIEKILLAGRDLTDYMCRILKDD-DYHFETTAEKETVRDIKEKLCYVADDYEAELKKAGEGGE-------LEESYALPDGRPLKISTQR-FQCPEFLFQPDLGGRECKSVHQLTYDSIMTCDLDVRKDLYANIILSGGTTMFPGLG-ERLYKEMKDL-----------APQTMKVKVIASPDRKYAVWRGGSTLAKL--STFAGMWVTKEDYAEFGESIVHRKC---I #
# MEFNDVLT----NQPICIDNGSGVIKAGFAGEDQPKSFFPSY-VGRPKHLKI-MAGAIE-GDIFIGNKAQELRGLLKIKYPIEHGIVVDWDDMERIWQFIYT-EELKTVS-EEHPVLLTEAPLNPRTNRDQAAQVFFETFNVPALFT--SIQAVLSLYASGRTTGVVLDSGDGVTHAVPIYEGFAMPSAIRRIDIAGRDVTEYLQLLLRKS-GTIFHTSAEKEIVRIIKEKCSYVTLDPRKEEKEWINASISGGKDYTKEEEFKLPDGNVLRLGAER-FRAPEILFDPEIIGSEYSGIHQVVVDAISRVDLDLRKSLFGNIVLSGGSTLTRGFG-DRLLSEIRRL-----------AVKDVKIKIFAPPERKYSTWIGGSILASL--STFRKMWVSAEEYQE-DPDIIHRKS---I #
# MD-QLSDSYALYNQPVVIDNGSGIIKAGFSGEERPKALEYCL-VGNTKYDKV-MLEGLQ-GDTFIGNNAQKLRGLLKLRYPIKHGVVEDWDSMELIWSYVLN-EVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYV--SNPAVLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIGGADITEQLQFQLRKSAGVSLFSSSEREIVRTMKEKVCYLAKNIKKEEEKYLQGTQD------LISTFKLPDGRCIEVGNDR-YRAPEILFSPQIIGLGYDGLSDMCMQSIWKVDLDLRKPLLSSIILSGGTTTLKGFG-DRMLWDLEAL-----------TKGTSKIKIIAPSERKYTTWIGGSILTGL--STFQRLWTKKSDWLE-DSTRVYSNL---M #
# MD---SQG----RKVIVVDNGTGFVKCGYAGTNFPAHIFPSM-VGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDP-KECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYV--AVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAGRDITKYLIKLLLQR-GYNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTV-------LSQQYTLPDGRVIRLGGER-FEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLP-SRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGGIARCMAKLGIKA #

Iteration

LeveldcaL#cutstime [s]U BoundU /wo cg costcost2
72254 7.3295771257376 5711157111
64126 3.2935744757111 5707957079
5862 1.8845711157079 5704557045
41630 1.3265704557045 5701256979
33214 1.4435697956979 5695256952
2646 1.7695695256952 5694056940
11282 3.6435694056940 5694056940
02560 77.9865694056940 5693856938

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.