Oma results of: arp

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Information

Number of sequences	5
Longest sequence	418
Average identity	29

best oma cost	64154
at segment width
time[s]	?
mem[pages]	0
mem[MB](8kb/page)	0

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990614:1115)

Alignment

    : MTDSLHNAPIVLDNGSGTIRAGFAGDDVPKCHFPSFVGRPKH--------LRVLAGALEGEVFIGQKAASELRGLLKIRYPLEHGIVTDWDDMEKIWAYVYD-EGLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQAVLSLYA-----SGRT-----TGVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTLLRKSGYVFHTSAEKEVVRLIKESVTYVAHDPRKEEKEWAAAKMDPAKIAEYVLPD---------------------GNKLKIGAERFRAPEILFDPEIIGLEYP-GVHQIVVDSINRTDLDLRRDLYSNIVLSGGSTLTKGFGDRLLTEVQKLA----------------VKDMRIKIFAPP-ERKYSTWIGGSILAGLSTFRK-MWVSIDDWHENP------DIIHTKFT :
    : MDRSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRA------VNKIGDIEVKDLMVG-DEASQLRSLLEVSYPMENGVVRNWDDMCHVWEYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAAWTLYA-----QGLI-----SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRL---ALETTVLVESYTLPD---------------------GRVIKVGGERFEAPEALFQPHLINVEGP-GIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLY-----LERVLKNDTEKLAKFKIRIEDPP-RRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQG--LKVLQKLQKISH :
    : MAGRL--PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG-DEAIEKPTYATKW-PIRHGIVEDWDLMERFMEQVIF-KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAA--SWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKY--DTDGSKWIKQYTGIN------AISKK----------EFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHH-MQRYAVWFGGSMLASTPEFYQ-VCHTKKDYEEIGPSICRHNPVFGVMS :
    : MAN----AVVVLDNGAHTAKVGLANQDEPH-VVPNCIMKAKSER------RRAFVGNQI-------DECRDTSALYYIL-AFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYRH--LNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQV-GIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALV----------------PDDLEVSLICPE-DPVRYAWYGGKEVATSPNFEE-FVYTQDDYEEYG-----FQGINQ--R :
    : MSL----TTIIFDNGGHNMKIGTIDSESPR-LVPNSIVKAKHEK------KRVFVAHEQ-------EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKH-----SNKINNEK-CAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYRQ--LNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQGNTTMKRYIMPDFHSTFRGVVKDVKEPHDPQ--IPSIHLGVERFAIPEILFNPSDIDIDQC-GVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSML----------------PAEYGLNVSNDVINPQTHSWHCGQELLTASKV---PWINRKDWDERGDSLEFSNFFQTLVQ :

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
7	2	254	7.454	65829	65013	64504	64504
6	4	126	3.510	64944	64504	64492	64492
5	8	62	2.154	64756	64492	64310	64310
4	16	30	3.108	64414	64310	64208	64187
3	32	14	2.894	64211	64187	64162	64162
2	64	6	8.942	64162	64162	64161	64161
1	128	2	768.299	64161	64161	64154	64154

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.