Oma results of: 1pamA

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Information

Number of sequences5
Longest sequence572
Average identity18
  
best oma cost86482
at segment width
time[s]?
mem[pages]0
mem[MB](8kb/page)0

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990610:2033)

Alignment

    : TDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGITAI-WISQPVENIYSVINYSGVNNTAYHGYW---ARDFKKTNP---AY-----GTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN-LL-GGYTNDTQNLFHHYG----GTDFSTIENGIY-------KNL------YDLADLNHNNSSV-------DVYLKDAIK------------MWL--DLGVDGIRVDAV--KHMPFGWQKSFMATINNYK--------PVFT--FGEWFLGVNEISPEYHQFANESGMSLLDFR--FAQKARQVFRD----NTDNMYGLKAMLEGSEVD------YAQVNDQVTFIDNHDMERFHTSNG----DRRKLE-----QALAFTLTSR-GVPAI-----YYGSEQYMSGGNDPD---NRARLPSFSTTTTAYQVIQKLAPLRKSNPAIA----YGSTHERWINNDVII--YERKFGNNVAVVAI---NRNMNTPASITGLVTSLPRG-SYNDVLGGIL--NGNTLTVGAGG----AASNFTLAPGGTAVWQYTTDATTPIIGN------- :
    : GR---TSIVHLFEW-------R------------------WVDIALE-CERYLAPKGFGGV-QVSPPNENVAI----HNPFRPWWERYQ---PVSYKLCTR----S-----GNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGS----RDFPAVPYSGWDFNDG---KCKTGSGDIENY-------NDATQVRD-CRLSGL-LDLALG-------KDYVRSKIA----EYM-----NHL-IDIGVAGFRIDAS--KHMWPGDIKAILDKLHNLNSNWFPEGSKPFI--YQEVIDLGGEPIKS-SDYFGNG--RVTEFK--YGAKLGTVIRKWN--GEKMSY-LKNWGEGWG--------FMPSDRALVFVDNHDNQRGHGAGGASILTFWDAR--LYKMAVGFMLAHPYGFTRVMSS--YRWPR-YFENGKDVN---DWVGPPNDNGVTKEVTINPDTTCGNDWVCEHR---WRQIRNMVNFRNVVDGQPFTNWYDNGSNQVAF---GRGNRGFIVFNN--DDWTFSLTLQTGLPAGTYCDVISGDKINGNC---TGIKIYVSDDGKAHFSISNSAEDPFIAIHAESKL- :
    : GD---EIILQGFHWNVVREAPN---------------D--WYNILRQ-QAATIAADGFSAI-WMPVPWRDFSS--WSDGSKSGGGEGYF---WHDFNKNGR----Y-----GSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGG---DADLNTGHPQVYGMFR---DEFTNLRSQYGAGGFRFDFV---------RGYAPERVN------------SWM-TDSADNSFCVGQL------------W-KGPSEYP------NWD-WR--NTASW---QQII---KDWSDRA--KCPVFD--FALKERM--------QNGSIADWKHGLNGNPD-------PRWREVAVTFVDNHDTGYSPGQNGGQ--HHWALQDGLIRQAYAYILTSP-GTPVV-----YWDHM-Y-----------DWGYGDFIRQL-----IQVRRAAGVRADSAIS----FHSG----YSGLVAT----VSGSQQTLVVAL---NSDLGNPGQVAS--GSFSEA-----VNASNG--QVRVWRSGTGS----GGGE--PGALVSVSFRCDNGATQMGDSVY------ :
    : DV-IYEVHVRGFTEQDTSIPAQ-------------YRG--TYYGAGL-KASYLASLGVTAVEFLPVQETQNDA--NDVVPNSDANQNYWGYMTENYFSPDR-RYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRG-LDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIV---DSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAV--DQRRAA----RTGMAFEMLSA-GTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTF--TLPAPP--SGTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK :
    : LN---GTLMQYFEWYMPNDGQH------------------WKRLQND--SAYLAEHGITAV-WIPPAYKGTSQ----ADVGYGAYDLYD---LGEFHQKGTVRTKY-----GTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNR-VISGEHLIKAWTHFHFPGR---GSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAYDYLMYAD-----IDYDHPDVAAEIKRWG-----TWYANELQLDGFRLDAV--KHIKFSFLRDWVNHVREKT------GKEMFT--VAEYW---QNDLGALENYLNKT--NFNHSV--FDVPLHYQFHAAS--TQGGGYDMRKLLNSTVV-------SKHPLKAVTFVDNHDTQPGQSLESTV--QTWFKP-----LAYAFILTRESGYPQV-----FYGDM-Y-------G---TKGDSQREIPA-----LKHKIEPILKARKQYA----YGAQHDY-FDHHDIV----GWTREGDSSVA----NSGLAALITDGP--GGAKRM-----YVGRQN--AGETWHDITGN----RSEPVVINSEGWGEFHVNGGSVSIYVQ-------- :

Iteration

LeveldcaL#cutstime [s]U BoundU /wo cg costcost2
82351 11.0099069388773 8747087470
74254 7.9048899087470 8736587365
68126 4.5198838987365 8718187181
51662 4.2648781387181 8691886569
43230 69.6528671386569 8650386482

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.