Oma results of: 1pkm

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Information

Number of sequences	4
Longest sequence	449
Average identity	34

best oma cost	42081
at segment width
time[s]	762.8
mem[pages]	27112
mem[MB](8kb/page)	212

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990610:2033)

Alignment

# VALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPEIRTGTTTNDV-DYPIPPNHEMIFTTDDKYAKACDDKIMYVD--YKNITKVISAGRIIYVDDGVLSFQVLEVVD-KDTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDKEDLRFGVK--NGVHMVFASFIRTANDVLTIREVLGEQGKD-VKIIVKIENQQGVNN---FDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDD---MRNCTPKPT---STTETVAASAVAAVFEQKAKAI---IVLSTSGTTPRL--VSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKK-GDTYV #
# AALIEEGANVFRFNFSHGDHPEQGARMATVHRAEEI-AGHKVGFLLDTKGPEMRTELFTDGADSISVVTGDKFRVATKQGLKSTPELIALNVGG-LADIFDDVEIGQTILIDDGKLGLSLTGKDATRAEFEVEAQNDGVIGKQKGVNIPNTKIPFPALAERDDADIRFGLSPGQGINFIAISFVRTANDVKEVRRICEETGPNHVQLLAKIENQQGIEN---LDEIIEAADGIMIARGDMGIEVPFEMVPVYQKLIISKVNKAGKIVVTATNMLESMTYNPRATRSEISDVFNAVIDGTDATMLSGESANGKYPRESVRTMATVNKNAQTMLK---EYGR---LHPERYDKS---TVTEVVAASVKNAAEAMDVKLI---VALTESGNTARL--ISKHRPDADILAITFDEKVERGLMINWGVIPMMTEKPA------STDDMFEVAEKVALASGLVEA-GDNII #
# EKIIAAGANVVRMNFSHGTPDDHIGRAERVRSIAKK-LGKTVAILGDLQGPKIRVSTFKDG--KIFLNVGDKFILDAELPKGEGTQESV-GLD--YKTLPQDVVPGDILLLDDGRVQLKVLSTDG--AKVFTEVTVGGPLSNNKGINKLGGGLSADALTEKDKADIITAAR--IGVDFLAVSFPRSSADLNYARELAQQAGLN-AKIVAKVERAETVNDEAAMDDIILASDVIMVARGDLGVEIGDPELVGVQKKLIRRSRQLNRAVITATQMMESMISNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMASVCLGAEKMPSI--NVSR---HRMDKEFET---IEESVAMSAMYAANHKMGVAAI---VTLSSTGRTPLL--MSRISSGLPIFALSRNQETLNLCALYRGVTPIYHGEES------RTEAGAKAAPQSLKEKGYLST-GDLVL #
# KAIIKSGVSVIRLNFSHGTHEEQQVRIKIVRDVAKA-MNIPVSIMLDTNGPEIRIVETKKE--GLKITKDSEVIINTMSKMIASDNFAVSDASGKYQNMVNDVNIGQKILVDDGKLTLVVRVTDKQHNQVICVAKNDHTVFTKKRLNLPNAQYSIPFLSEKDLKDIDFGLS--QGIDYIAASFVNTVADIKQLRDYLKLKNAGSVKIIAKIESNHALNN---IDKIIKASDGIMVARGDLGLEIPYYQVPYWQRYMIKACRFFNKRSITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETASGLYPLNAVAVMQKIDKQSETFFDY--QYNVNYYLKNSTAKSRFWHNVVNLPLTKKTVPKRKLVNSAFKYDFIVYPTNNINRIYALSNARLAAAVIILTNNKRVYTGHGVDYGIFCYLIDKNP------NQLTKAELIELAWKAINHYQAYGDLEK #

Iteration

Level	dcaL	#cuts	time [s]	U Bound	U /wo cg	cost	cost2
8	2	255	7.172	42621	42365	42163	42163
7	4	254	6.683	42419	42163	42163	42163
6	8	126	3.528	42283	42163	42163	42163
5	16	62	1.889	42219	42163	42156	42122
4	32	30	1.148	42186	42122	42122	42122
3	64	14	1.028	42154	42122	42117	42117
2	128	6	1.771	42117	42117	42100	42100
1	256	2	11.350	42100	42100	42100	42100
0	512	0	722.000	42100	42100	42081	42081

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.