Oma results of: arp

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Information

Number of sequences5
Longest sequence418
Average identity29
  
best oma cost64154
at segment width
time[s]?
mem[pages]0
mem[MB](8kb/page)0

oma version info: (1.0-solaris-gnu=egcs-2.91.66-opt-watch-990610:2033)

Alignment

    : MTDSLHNAPIVLDNGSGTIRAGFAGDDVPKCHFPSFVG---RPK-----HLRVLAGALEGEVFIGQKAASELRGLLKIRYPLEHGIVTDWDDMEKIWAYVYD-EGLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQAVLSLYA-----SGRT-----TGVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTLLRKSGYVFHTSAEKEVVRLIKESVTYVAHDPRKEEKEWAAAKMDPAKIAEYVLPD---------------------GNKLKIGAERFRAPEILFDPEIIGLEYPG-VHQIVVDSINRTDLDLRRDLYSNIVLSGGSTLTKGFGDRLLTEVQKLA----------------VKDMRIKIFAPP-ERKYSTWIGGSILAGLSTFRK-MWVSIDDWHENP------DIIHTKFT- :
    : MDRSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVG---RPM---IRAVNKIGDIEVKDLMVG-DEASQLRSLLEVSYPMENGVVRNWDDMCHVWEYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAAWTLYA-----QGLI-----SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRL---ALETTVLVESYTLPD---------------------GRVIKVGGERFEAPEALFQPHLINVEGPG-IAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLY-----LERVLKNDTEKLAKFKIRIEDPP-RRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQG--LKVLQKLQKISH- :
    : MAGRL--PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG-DEAIEKPTYATKW-PIRHGIVEDWDLMERFMEQVIF-KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAA--SWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKY--DTDGSKWIKQYTGIN------AISKK----------EFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHH-MQRYAVWFGGSMLASTPEFYQ-VCHTKKDYEEIGPSICRHNPVFGVMS- :
    : MAN----AVVVLDNGAHTAKVGLANQDEPH-VVPNCIM---KAK---SERRRAFVGNQI-------DECRDTSALYYIL-AFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYRH--LNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVG-IPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALV----------------PDDLEVSLICPE-DPVRYAWYGGKEVATSPNFEE-FVYTQDDYEEYG--------FQGINQR :
    : MSL----TTIIFDNGGHNMKIGTIDSESPR-LVPNSIV---KAK---HEKKRVFVAHEQ-------EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKH-----SNKINNEK-CAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYRQ--LNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQGNTTMKRYIMPDFHSTFRGVVKDVKEPHDPQ--IPSIHLGVERFAIPEILFNPSDIDIDQCG-VAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSML----------------PAEYGLNVSNDVINPQTHSWHCGQELLTASKV---PWINRKDWDERGDSLEFSNFFQTLVQ- :

Iteration

LeveldcaL#cutstime [s]U BoundU /wo cg costcost2
72254 7.4046582965013 6450464504
64126 3.3546491264504 6449264492
5862 2.0166472464492 6431064310
41630 1.7546438264310 6420864187
33214 1.8976421164187 6416264162
2646 7.7976416264162 6416164161
11282 661.9046416164161 6415464154

Picture of Iteration

Explanation of the key.

Picture of Watches

Explanation of the key.