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Attention:
Due to technical maintenance some tools might be unavailable. See maintenance information. 
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paRNAss - Example Applications
Users and friends of paRNAss:
Our recent tool RNAshapes computes exact probabilities of an RNA molecule folding into either one of several alternative shapes. This is precise information on what paRNAss tries to achieve by sampling. Consider using RNAshapes in shape probability mode, for your task! paRNAss will soon go out of service.
Our recent tool RNAshapes computes exact probabilities of an RNA molecule folding into either one of several alternative shapes. This is precise information on what paRNAss tries to achieve by sampling. Consider using RNAshapes in shape probability mode, for your task! paRNAss will soon go out of service.
To give you an impression of the work with paRNAss here are some example applications. A click on the sequence name will lead you to a page where the most important results are shown as well as the input parameters.
- Spliced leader RNA from Leptomonas collosoma
- Attenuator
- S15 mRNA from E. coli
- S-box leader of B. subtilis metE
- thiM-Leader RNA of E. coli
- 5'-UTR of MS2 RNA genome E. coli
- HDV ribozyme
- E. coli hok
- 5'-UTR of E. coli btuB mRNA
- Tetrahymena group I intron
- E coli dsrA
- B. subtilis ypaA leader
- T4 td gene intron
- B. subtilis ribD leader
- 3'-UTR of AMV RNA
- E. coli alpha operon mRNA
- HIV-1 leader
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