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                                    Bielefeld         University Bioinformatic Service
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Welcome to pKiss


pKiss is a tool for secondary structure prediction including kissing hairpin motifs.
The new idea is to construct a kissing hairpin motif from an overlay of two simple pseudoknots.
We implemented three strategies of pKiss with time/space complexities of:

Strategy time complexity space complexity
Strategy A O(n4) O(n2)
Strategy B O(n4) O(n3)
Strategy C O(n5) O(n2)


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Sun Nov 7 16:03:14 2010