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pKiss
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Choose one of pKiss functions ...
mfe : computes the single energetically best secondary structure.
subopt : predicts mfe & energetically suboptimal structures.
enforce : predicts mfe, assuming input sequence has to fold into a pseuoknot.
local : predicts local mfe & suboptimal pseudoknots, i.e. leading and trailing input bases can be omitted.
shapes : computes abstract shape analysis.
probs : computes probabilistic shape analysis.
cast : search for common shape classes for all sequences of a given RNA family.
eval : evaluates the free energy of an RNA molecule in fixed secondary structure.
abstract : abstracts a dot-Bracket string into a shape string.
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