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Attention:
Due to technical maintenance some tools might be unavailable. See maintenance information. 
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pknotsRG - References
A description of the algorithms can be found in:
- Jens Reeder and Robert Giegerich.
From RNA Folding to Thermodynamic matching, including Pseudoknots
Technischer Report 2003-03, Technische Fakultaet, Universitaet Bielefeld. - Jens Reeder and Robert Giegerich.
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
BMC Bioinformatics, 5:104, 2004. - Jens Reeder, Peter Steffen and Robert Giegerich
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows
Nucl. Acids. Res., 35(suppl_2): W320-324, 200.7
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