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Supplementary Data
Consensus Shapes: An Alternative to the Sankoff Algorithm for RNA
Consensus Structure Prediction
Jens Reeder and Robert Giegerich (published online in
Bioinformatics advance access, 2005)
| ID | # | Length | Description | |
| lin4 | 9 | 70-72 | lin-4 micro-RNA precursor | download |
| IRES | 7 | 79-84 | IRES element of Picornaviridae viruses | download |
| tRNA | 11 | 76-93 | transfer RNA | download |
| srp RNA | 4 | 78-107 | RNA of the (eubacterial) Signal Recognition Particle | download |
| riboswitch | 7 | 97-100 | Purine riboswitch | download |
| S box | 11 | 103-114 | SAM riboswitch (S box leader) | download |
| 5S rRNA | 5 | 117-120 | component of the large ribosomal subunit | download |
| U12 RNA | 6 | 130-157 | small nuclear RNA, component of the spliceosome | download |
| U1 RNA | 4 | 157-163 | see U12 | download |
| U2 RNA | 5 | 188-197 | see U12 | download |
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