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Author: M. Hoechsmann
RNAforester is a command line based tool for comparing RNA secondary structures. It supports the computation of pairwise and multiple alignment of structures based on the tree alignment model (see References). The user interface follows the philosophy of the Vienna RNA Package

Users of RNAforester are requested to cite :
Hoechsmann and Matthias The Tree Alignment Model: Algorithms, Implementations and Applications for the Analysis of RNA Secondary Structures, Bielefeld university, 2005
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