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RNAforester 1.5 - Submission

pairwise multiple
Please enter your sequences and structures here:
global alignment
local alignment
small-in-large alignment
suboptimal local alignments within % of global optimum
score for a base match
score for a base mismatch
score for a base deletion
score for a base pair replacement
score for a base pair bond deletion
calculate relative score
Use RIBOSUM-85-60 substitution matrix
Cluster RNA secondary structures
Prune base-pairs in consensus structure below probability
Predict structures
Prune base-pairs below probability
examples:
examples:
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Wed Dec 17 12:55:19 2008