Please choose one of the program modes above.

Please enter an RNA-sequence 1 Please either upload a fasta file or enter fasta sequence in the text input field!

or upload:

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Program mode 1b : Overview Shape folding Complete suboptimal folding Shape probabilities Sampling Consensus mode

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Shape type 2a : 5: Use the most abstract shape 4: Use an intermediate abstraction level 3: Use an intermediate abstraction level 2: Use an intermediate abstraction level 1: Use the least abstract shape

Match Shape 2b

Calculate structure probabilities 2c	Generate structure graphs 2d
Allow lonely base pairs 2e

Ignore unstable structures 2f

Window size 2g : Window increment 2g :

Set maximum loop length 2h

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Normal probability mode 3a

Also calculate shreps 3b

Calculate probabilities only for the energetical best shapes 3c

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Energy Range 4 % of mfe kcal/mol

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Probability cutoff filter 5a

Probability output filter 5b

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Number of sampling iterations 6 :

Omit samples in output7

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