RNAshapes - submission page

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Bielefeld University Bioinformatic Service

RNAshapes - submission page

Users and friends of RNAshapes. There is an updated version of RNAshapes available, which is based on Bellman's GAP. This version provides the same functionality within a modern web application. Consider using the latest version of RNAshapes for your task.

Shape folding

Suboptimal folding

Shape probabilities

Sampling

Consensus shapes

Rapid Shapes

Shape Combinatorics

Please enter an RNA-sequence 1

or upload:

Program mode 1b :

Shape type 2a :

Match Shape 2b

Calculate structure probabilities 2c	Generate structure graphs 2d
Allow lonely base pairs 2e

Ignore unstable structures 2f

Window size 2g : Window increment 2g :

Set maximum loop length 2h

Normal probability mode 3a

Also calculate shreps 3b

Calculate probabilities only for the energetical best shapes 3c

Energy Range 4

Probability cutoff filter 5a

Probability output filter 5b

Number of sampling iterations 6 :

Omit samples in output7

Users and friends of RNAshapes. There is an updated version of RNAshapes available, which is based on Bellman's GAP. This version provides the same functionality within a modern web application. Consider using the latest version of RNAshapes for your task.