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RNAshapes - submission page

Users and friends of RNAshapes. There is an updated version of RNAshapes available, which is based on Bellman's GAP. This version provides the same functionality within a modern web application. Consider using the latest version of RNAshapes for your task.

Shape folding Suboptimal folding Shape probabilities Sampling Consensus shapes Rapid Shapes Shape Combinatorics
Please enter an RNA-sequence 1
or upload:

Program mode 1b :

Shape type 2a :
Match Shape 2b
Calculate structure probabilities 2c Generate structure graphs 2d
Allow lonely base pairs 2e
Ignore unstable structures 2f
Window size 2g : Window increment 2g :
Set maximum loop length 2h

Normal probability mode 3a
Also calculate shreps 3b
Calculate probabilities only for the energetical best shapes 3c

Energy Range 4

Probability cutoff filter 5a
Probability output filter 5b

Number of sampling iterations 6 :
Omit samples in output7

Users and friends of RNAshapes. There is an updated version of RNAshapes available, which is based on Bellman's GAP. This version provides the same functionality within a modern web application. Consider using the latest version of RNAshapes for your task.

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Fri May 3 15:04:54 2013