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RNAshapes
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Choose one of RNAshapes functions ...
probing : computes structure probing enriched predictions.
probs : computes probabilistic shape analysis.
shapes : computes shape representative structures.
sample : sampling of shape class probabilities via stochastic backtracing.
cast : search for common shape classes for all sequences of a given RNA family.
mfe : computes the single energetically best secondary structure.
subopt : predicts mfe & energetically suboptimal structures.
mea : computes the maximum expected accuracy (MEA) secondary structure.
outside : computes base-pair probabilities.
eval : evaluates the free energy of an RNA molecule in fixed secondary structure.
abstract : abstracts a dot-Bracket string into a shape string.
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