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Genome Browser
allow an interactive
visualization of genome
sequence and annotation.
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NCBI's Map Viewer provides
special browsing capabilities for a subset of organisms in
Entrez Genomes. Map Viewer allows you to view and search an
organism's complete genome, display chromosome maps, and
zoom into progressively greater levels of detail, down to
the sequence data for a region of interest. If multiple maps
are available for a chromosome, it displays them aligned to
each other based on shared marker and gene names, and, for
the sequence maps, based on a common sequence coordinate
system.
Ensembl [ Hubbard
et al. 2007] is a joint project between EMBL -
EBI and the Sanger Institute to develop a software system
which produces and maintains automatic annotation on
selected eukaryotic genomes. The Ensembl project aims to
provide: (1) accurate, automatic analysis of genome data,
(2) analysis and annotation maintained on the current data,
(3) presentation of the analysis to all via the web, and (4)
distribution of the analysis to other bioinformatics
laboratories.
Ensembl concentrates on vertebrate genomes, but other
groups have adapted the system for use with plant and fungal
genomes.
The Genome Browser zooms and scrolls over chromosomes,
showing the work of annotators worldwide. The Gene Sorter
shows expression, homology and other information on groups
of genes that can be related in many ways. Blat quickly
maps your sequence to the genome. The Table Browser
provides convenient access to the underlying
database. VisiGene lets you browse through a large
collection of in situ mouse and frog images to examine
expression patterns. Genome Graphs allows you to upload and
display genome-wide data sets.
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