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Attention:
Due to technical maintenance some tools might be unavailable. See maintenance information. 
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XML-Grammars
XML-Grammars developed/hosted at the BiBiServ
| Grammar | Target Namespace / Description |
| AlignmentML (1.2) | http://hobit.sourceforge.net/xsds/20060602/AlignmentML AlignmentML is a format containing (multiple) alignment information any alignment program like DCA, Dialign or ClustalW can produce. Like in SequenceML different sequence types are supported. (older version(s) : 1.1, 1.0, 0.1) |
| rnamotif.xsd | http://bibiserv.techfak.uni-bielefeld.de/xsd/20060306/rnamotif |
| RNAStructAlignmentML (2.0) | http://hobit.sourceforge.net/xsds/20060515/rnastructAlignmentML RNAStructAlignmentML is a format for storing rna secondary structure alignments as computed by e.g. the RNAforester or RNAalifold tool. RNAStructAlignment uses a RNAStructML-like architecture, but uses AlignmentML instead of SequenceML as a basic type. (older version(s) : 1.0, 0.1) |
| RNAStructML.xsd (2.0) | http://hobit.sourceforge.net/xsds/20060201/rnastructML RNAStructML is a format for storing rna secondary structure information. One widely accepted usage for rnatools, such as RNAshapes ,RNAfold or Mfold is the proprosal of rna secondary structures, based on thermodynamic principles. RNAStructML is based on SequenceML and uses DotBracket strings for storing the structure information. (older version(s) : 1.0) |
| sdl.xsd | http://bibiserv.techfak.uni-bielefeld.de/xsd/20051101/sdl |
| SequenceAnnotationML.xsd (1.1) | http://hobit.sourceforge.net/xsds/20060515/sequenceAnnotaionML SequenceAnnotationML is based on SequenceML. While SequenceML contains raw sequence information, SequenceAnnotationML allows additional annotations. Thus, while SequencemL is often used as input for bioinformatic tools, \saml\ can be used to store the result. SequenceAnnotationML allows modelling sites of interest of small sequences (DNA, RNA or protein). Furthermore it is possible to encapsulate whole genome annotations due to its recursive structure. (older version(s) : 1.0 ) |
| SequenceML.xsd (3.0) | http://hobit.sourceforge.net/xsds/20090917/sequenceML SequenceML deals with all kinds of simple sequence information often used as input for several common bioinformatics tools. It is designed to be used as a replacement for the FASTA format, containing all of FASTA's information content while avoiding that format's aforementioned consistency problems. SequenceML differentiates between nucleic- and aminoacid sequences following the IUPAC standard and also allows the user to add free sequence information based on basic types defined by BioTypes. SequenceML also supports a mandatory sequence id and an optional detailed sequence description. Since current version (3.0) SequenceML supports simple sequence annotations (annotated position and property|ies). (older version(s) : 2.0, 1.0, 0.1) |
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