Evolutionary Relationships

• Roci Reconstruction of Conserved Intervals

  Roci reconstructs ancestral gene orders of a phylogenetic tree. Given the topology of a phylogenetic tree and the gene orders of the leaf nodes, it calculates sets of gene orders for the inner nodes, represented by conserved intervals.

• Rococo Reconstruction Of Conserved Optimal Clusters of Orthologs

  Rococo reconstructs ancestral gene clusters. Given the topology of a phylogenetic tree and the gene orders of the leaf nodes, it calculates sets of gene clusters for the inner nodes preserving consistency and parsimony.

• ROSE Random-model Of Sequence Evolution

  ROSE implements a new probabilistic model of RNA-, DNA-, or protein-sequence evolution.

• SplitsTree Distance-based phylogeny reconstruction based on split-decomposition

  SplitsTree uses the split decomposition method to analyse and visualize distance data, e.g. data derived from biosequences. See also the original side of splitstree at the University of Tuebingen.